Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC025678.1-201ENST00000567861 338 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 MIR4703-201ENST00000577728 79 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 MIR3162-201ENST00000581818 82 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC008945.2-201ENST00000606056 604 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC017083.3-201ENST00000609955 700 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 AC099506.2-201ENST00000623074 221 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 U6.99-201ENST00000637524 83 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 MTND4P35-201ENST00000604257 1375 ntBASIC2.71□□□□□ -1.98
PDLIM3Q53GG5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 HSPA8P4-201ENST00000511877 1920 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC022336.2-201ENST00000568966 2538 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1322P-201ENST00000364309 107 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNU6-658P-201ENST00000384606 106 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL21P75-201ENST00000396599 483 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL21P28-201ENST00000401418 483 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL592114.1-201ENST00000403842 483 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL138885.1-201ENST00000405921 675 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 BTF3P7-201ENST00000407097 488 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNU6-648P-201ENST00000410190 107 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1025P-201ENST00000410629 104 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNA5SP492-201ENST00000411330 114 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 OR6C66P-201ENST00000414917 930 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 USP9YP27-201ENST00000418455 438 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 MTCO1P20-201ENST00000425366 358 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC007560.1-201ENST00000426912 237 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL36AP6-201ENST00000435770 321 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC016691.1-201ENST00000441321 413 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 FABP5P15-201ENST00000453566 214 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL21P39-201ENST00000463605 483 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL21P93-201ENST00000480465 489 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC087190.1-201ENST00000484462 480 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC093591.1-201ENST00000491435 481 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RPL21P16-201ENST00000495531 483 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC117522.3-201ENST00000507974 584 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNA5SP217-201ENST00000515959 91 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1178P-201ENST00000516674 107 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 SNORA70.18-201ENST00000516696 98 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 RNA5SP380-201ENST00000517190 98 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 MTND4LP26-201ENST00000518144 282 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 MTND1P35-201ENST00000526739 508 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 MIR5583-1-201ENST00000580941 59 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC174048.1-201ENST00000603389 144 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL138889.2-201ENST00000603883 242 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AL356321.1-201ENST00000621360 228 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 U4.6-201ENST00000621618 127 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC010338.1-201ENST00000621823 717 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 IGHVIII-44-202ENST00000636235 289 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 AC004972.1-201ENST00000623934 2209 ntBASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PDLIM3Q53GG5 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC006020.1-201ENST00000420179 1854 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU6-552P-201ENST00000362869 119 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1180P-201ENST00000364935 107 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 SNORA44-201ENST00000384584 132 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.534-201ENST00000384599 112 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MIR181A1-201ENST00000385026 110 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MIR301A-201ENST00000385261 86 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MIR767-201ENST00000390228 109 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNA5SP247-201ENST00000411181 105 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RPS3AP44-201ENST00000425466 790 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AL365496.1-201ENST00000426885 215 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 GTF2IP20-201ENST00000431663 360 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AL596276.1-201ENST00000434465 418 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC104058.1-201ENST00000448028 297 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 DPPA3P1-201ENST00000448050 469 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU7-23P-201ENST00000459465 62 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RPS27P26-201ENST00000494583 239 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU1-143P-201ENST00000516296 146 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1315P-201ENST00000517187 99 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms