Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.76□□□□□ -1.81
MSX2P35548 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.76□□□□□ -1.81
MSX2P35548 MIR5684-201ENST00000585074 65 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AC006023.2-201ENST00000609916 167 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AL138825.1-201ENST00000618587 192 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AC078938.1-201ENST00000620993 318 ntBASIC3.76□□□□□ -1.81
MSX2P35548 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 AC073073.2-201ENST00000609827 2578 ntBASIC3.76□□□□□ -1.81
MSX2P35548 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
MSX2P35548 OR56B2P-202ENST00000641377 2453 ntBASIC3.76□□□□□ -1.81
MSX2P35548 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.75□□□□□ -1.81
MSX2P35548 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX2P35548 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX2P35548 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX2P35548 Y_RNA.48-201ENST00000362710 103 ntBASIC3.75□□□□□ -1.81
MSX2P35548 Y_RNA.276-201ENST00000364732 109 ntBASIC3.75□□□□□ -1.81
MSX2P35548 Y_RNA.324-201ENST00000365165 102 ntBASIC3.75□□□□□ -1.81
MSX2P35548 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
MSX2P35548 Z98941.1-201ENST00000407764 100 ntBASIC3.75□□□□□ -1.81
MSX2P35548 RNU6-325P-201ENST00000411132 105 ntBASIC3.75□□□□□ -1.81
MSX2P35548 RPL23AP1-201ENST00000428990 471 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AL592045.1-201ENST00000429867 352 ntBASIC3.75□□□□□ -1.81
MSX2P35548 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX2P35548 HSPD1P21-201ENST00000436541 245 ntBASIC3.75□□□□□ -1.81
MSX2P35548 HMGB1P37-201ENST00000439613 609 ntBASIC3.75□□□□□ -1.81
MSX2P35548 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX2P35548 ANP32BP2-201ENST00000454525 545 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC108860.1-201ENST00000484521 383 ntBASIC3.75□□□□□ -1.81
MSX2P35548 TRBV12-2-201ENST00000489763 344 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC022493.1-201ENST00000492984 337 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC093852.1-201ENST00000503587 266 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX2P35548 Y_RNA.680-201ENST00000516441 93 ntBASIC3.75□□□□□ -1.81
MSX2P35548 RN7SKP289-201ENST00000517244 295 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX2P35548 AP000889.1-201ENST00000530968 660 ntBASIC3.75□□□□□ -1.81
MSX2P35548 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.75□□□□□ -1.81
MSX2P35548 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.75□□□□□ -1.81
MSX2P35548 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX2P35548 AC125232.2-201ENST00000592457 143 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC110741.2-201ENST00000605278 268 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC123912.5-201ENST00000605470 343 ntBASIC3.75□□□□□ -1.81
MSX2P35548 RMST_4.1-201ENST00000616886 107 ntBASIC3.75□□□□□ -1.81
MSX2P35548 SNORD39.4-201ENST00000620099 78 ntBASIC3.75□□□□□ -1.81
MSX2P35548 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX2P35548 ZNF72P-201ENST00000425869 1908 ntBASIC3.75□□□□□ -1.81
MSX2P35548 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.75□□□□□ -1.81
MSX2P35548 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.75□□□□□ -1.81
MSX2P35548 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX2P35548 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX2P35548 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.74□□□□□ -1.81
MSX2P35548 AC233263.6-201ENST00000631132 1963 ntBASIC3.74□□□□□ -1.81
MSX2P35548 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.74□□□□□ -1.81
MSX2P35548 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSX2P35548 Y_RNA.222-201ENST00000364264 102 ntBASIC3.74□□□□□ -1.81
MSX2P35548 RNU1-132P-201ENST00000364300 164 ntBASIC3.74□□□□□ -1.81
MSX2P35548 Y_RNA.288-201ENST00000364854 92 ntBASIC3.74□□□□□ -1.81
MSX2P35548 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
MSX2P35548 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.74□□□□□ -1.81
MSX2P35548 AL356968.1-201ENST00000416622 474 ntBASIC3.74□□□□□ -1.81
MSX2P35548 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
MSX2P35548 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.74□□□□□ -1.81
MSX2P35548 PGBD4P6-201ENST00000421501 610 ntBASIC3.74□□□□□ -1.81
MSX2P35548 RPL18P10-201ENST00000425606 538 ntBASIC3.74□□□□□ -1.81
MSX2P35548 AC006946.1-201ENST00000429106 328 ntBASIC3.74□□□□□ -1.81
MSX2P35548 COX6B1P7-201ENST00000430845 235 ntBASIC3.74□□□□□ -1.81
MSX2P35548 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.74□□□□□ -1.81
MSX2P35548 AC087588.1-201ENST00000462203 316 ntBASIC3.74□□□□□ -1.81
MSX2P35548 RN7SL271P-201ENST00000487601 295 ntBASIC3.74□□□□□ -1.81
MSX2P35548 NDUFB4P9-201ENST00000511646 388 ntBASIC3.74□□□□□ -1.81
MSX2P35548 RNA5SP471-201ENST00000516971 106 ntBASIC3.74□□□□□ -1.81
MSX2P35548 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.74□□□□□ -1.81
MSX2P35548 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 TRAV32-201ENST00000553993 340 ntBASIC3.74□□□□□ -1.81
MSX2P35548 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.74□□□□□ -1.81
MSX2P35548 AC048347.1-201ENST00000624621 427 ntBASIC3.74□□□□□ -1.81
MSX2P35548 Z99571.1-201ENST00000636677 394 ntBASIC3.74□□□□□ -1.81
MSX2P35548 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
MSX2P35548 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
MSX2P35548 UBE2L2-201ENST00000254302 429 ntBASIC3.73□□□□□ -1.81
MSX2P35548 RNY1P16-201ENST00000363063 111 ntBASIC3.73□□□□□ -1.81
MSX2P35548 RNY3P11-201ENST00000364153 102 ntBASIC3.73□□□□□ -1.81
MSX2P35548 Y_RNA.214-201ENST00000364201 112 ntBASIC3.73□□□□□ -1.81
MSX2P35548 SNORA70.2-201ENST00000364506 135 ntBASIC3.73□□□□□ -1.81
MSX2P35548 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
MSX2P35548 Y_RNA.461-201ENST00000384263 103 ntBASIC3.73□□□□□ -1.81
MSX2P35548 RNU6-790P-201ENST00000384479 105 ntBASIC3.73□□□□□ -1.81
MSX2P35548 MT-TW-201ENST00000387382 68 ntBASIC3.73□□□□□ -1.81
MSX2P35548 MIR548I3-201ENST00000408378 149 ntBASIC3.73□□□□□ -1.81
MSX2P35548 MIR548I1-201ENST00000408810 149 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AL513331.1-201ENST00000411908 397 ntBASIC3.73□□□□□ -1.81
MSX2P35548 RHEBP3-201ENST00000411920 351 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms