Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.94□□□□□ -1.78
CBX4O00257 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.93□□□□□ -1.78
CBX4O00257 ZNF807-201ENST00000328088 1707 ntBASIC3.93□□□□□ -1.78
CBX4O00257 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CBX4O00257 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 RNA5SP119-201ENST00000362715 117 ntBASIC3.93□□□□□ -1.78
CBX4O00257 Y_RNA.151-201ENST00000363566 112 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RNU6-933P-201ENST00000384424 107 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RNU6-790P-201ENST00000384479 105 ntBASIC3.93□□□□□ -1.78
CBX4O00257 MIR7-3-201ENST00000384898 110 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RNA5SP306-201ENST00000411087 107 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RPL26P27-201ENST00000414397 437 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RPL31P12-201ENST00000422587 358 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC093151.1-201ENST00000427711 313 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC087650.1-201ENST00000431445 468 ntBASIC3.93□□□□□ -1.78
CBX4O00257 RPS15AP10-201ENST00000432472 382 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.93□□□□□ -1.78
CBX4O00257 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.93□□□□□ -1.78
CBX4O00257 SNORD5.1-201ENST00000458800 75 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC090096.1-201ENST00000489168 390 ntBASIC3.93□□□□□ -1.78
CBX4O00257 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.93□□□□□ -1.78
CBX4O00257 AC109479.2-201ENST00000517842 174 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC011602.1-201ENST00000546484 331 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC022432.1-201ENST00000595739 310 ntBASIC3.93□□□□□ -1.78
CBX4O00257 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.93□□□□□ -1.78
CBX4O00257 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.93□□□□□ -1.78
CBX4O00257 SRGNP1-201ENST00000603392 451 ntBASIC3.93□□□□□ -1.78
CBX4O00257 AC005034.5-201ENST00000604219 466 ntBASIC3.93□□□□□ -1.78
CBX4O00257 PART1_1.1-201ENST00000611761 217 ntBASIC3.93□□□□□ -1.78
CBX4O00257 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.93□□□□□ -1.78
CBX4O00257 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.93□□□□□ -1.78
CBX4O00257 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
CBX4O00257 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.92□□□□□ -1.78
CBX4O00257 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.92□□□□□ -1.78
CBX4O00257 Y_RNA.162-201ENST00000363683 102 ntBASIC3.92□□□□□ -1.78
CBX4O00257 U1.1-201ENST00000384101 164 ntBASIC3.92□□□□□ -1.78
CBX4O00257 RNU6-658P-201ENST00000384606 106 ntBASIC3.92□□□□□ -1.78
CBX4O00257 MIR199A2-201ENST00000385289 110 ntBASIC3.92□□□□□ -1.78
CBX4O00257 MIR888-201ENST00000401186 77 ntBASIC3.92□□□□□ -1.78
CBX4O00257 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.92□□□□□ -1.78
CBX4O00257 AL030996.1-201ENST00000411430 235 ntBASIC3.92□□□□□ -1.78
CBX4O00257 HMGB3P8-201ENST00000449709 577 ntBASIC3.92□□□□□ -1.78
CBX4O00257 MTATP6P7-201ENST00000453315 681 ntBASIC3.92□□□□□ -1.78
CBX4O00257 RNU6-1037P-201ENST00000459571 107 ntBASIC3.92□□□□□ -1.78
CBX4O00257 AC110768.1-201ENST00000509222 400 ntBASIC3.92□□□□□ -1.78
CBX4O00257 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.92□□□□□ -1.78
CBX4O00257 Y_RNA.670-201ENST00000516255 105 ntBASIC3.92□□□□□ -1.78
CBX4O00257 RNU1-103P-201ENST00000516502 125 ntBASIC3.92□□□□□ -1.78
CBX4O00257 RNU6-307P-201ENST00000516743 106 ntBASIC3.92□□□□□ -1.78
CBX4O00257 RNU6-703P-201ENST00000516946 107 ntBASIC3.92□□□□□ -1.78
CBX4O00257 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 SYF2P1-201ENST00000550658 413 ntBASIC3.92□□□□□ -1.78
CBX4O00257 HMGB1P14-201ENST00000557424 591 ntBASIC3.92□□□□□ -1.78
CBX4O00257 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.92□□□□□ -1.78
CBX4O00257 AL591516.1-201ENST00000611326 274 ntBASIC3.92□□□□□ -1.78
CBX4O00257 AL034408.1-202ENST00000636088 415 ntBASIC3.92□□□□□ -1.78
CBX4O00257 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
CBX4O00257 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CBX4O00257 AC018555.1-201ENST00000567548 1980 ntBASIC3.92□□□□□ -1.78
CBX4O00257 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
CBX4O00257 UBE3AP2-201ENST00000429033 2259 ntBASIC3.92□□□□□ -1.78
CBX4O00257 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
CBX4O00257 IPO8P1-201ENST00000455509 3109 ntBASIC3.92□□□□□ -1.78
CBX4O00257 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 RNU6-525P-201ENST00000363685 104 ntBASIC3.91□□□□□ -1.78
CBX4O00257 Y_RNA.202-201ENST00000364083 110 ntBASIC3.91□□□□□ -1.78
CBX4O00257 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CBX4O00257 Y_RNA.395-201ENST00000383945 109 ntBASIC3.91□□□□□ -1.78
CBX4O00257 SNORA5A-201ENST00000384111 134 ntBASIC3.91□□□□□ -1.78
CBX4O00257 RNU6-474P-201ENST00000384243 107 ntBASIC3.91□□□□□ -1.78
CBX4O00257 RNU6-1035P-201ENST00000384477 107 ntBASIC3.91□□□□□ -1.78
CBX4O00257 SNORA1.3-201ENST00000384676 136 ntBASIC3.91□□□□□ -1.78
CBX4O00257 RPL21P17-201ENST00000397467 475 ntBASIC3.91□□□□□ -1.78
CBX4O00257 RPS4XP3-201ENST00000398541 413 ntBASIC3.91□□□□□ -1.78
CBX4O00257 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CBX4O00257 SNORA57.3-201ENST00000411095 141 ntBASIC3.91□□□□□ -1.78
CBX4O00257 SNORD56-201ENST00000413522 71 ntBASIC3.91□□□□□ -1.78
CBX4O00257 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.91□□□□□ -1.78
CBX4O00257 USP9YP30-201ENST00000430729 455 ntBASIC3.91□□□□□ -1.78
CBX4O00257 AC011742.1-201ENST00000431448 434 ntBASIC3.91□□□□□ -1.78
CBX4O00257 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.91□□□□□ -1.78
CBX4O00257 DAP3P1-201ENST00000441522 278 ntBASIC3.91□□□□□ -1.78
CBX4O00257 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.91□□□□□ -1.78
CBX4O00257 RPL7P42-201ENST00000481005 679 ntBASIC3.91□□□□□ -1.78
CBX4O00257 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.91□□□□□ -1.78
CBX4O00257 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.91□□□□□ -1.78
CBX4O00257 SCARNA14-201ENST00000516903 136 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms