Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 GNRHR2P1-201ENST00000555315 631 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AL121821.2-201ENST00000556081 394 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC018638.8-201ENST00000588755 281 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 BNIP3P25-201ENST00000596023 559 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AL355877.2-201ENST00000603670 358 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC104662.1-201ENST00000604448 511 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC006077.1-201ENST00000604746 343 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 GABRG2-229ENST00000641017 3628 ntBASIC4.95□□□□□ -1.62
CCDC9Q9Y3X0 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 Y_RNA.530-201ENST00000384587 101 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 U3.37-201ENST00000408528 213 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC023141.4-201ENST00000412031 328 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC016831.2-201ENST00000417179 352 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AL365496.1-201ENST00000426885 215 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 NIPA2P5-201ENST00000452282 464 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 SNORA70.18-201ENST00000516696 98 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC023050.3-201ENST00000541142 333 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC006199.1-201ENST00000548728 219 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 MIR5047-201ENST00000579212 100 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 MIR7112-201ENST00000616126 65 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 AC103988.1-201ENST00000566382 2177 ntBASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC9Q9Y3X0 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 Y_RNA.160-201ENST00000363677 92 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 RNU6-1280P-201ENST00000365211 107 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 USP9YP20-201ENST00000419224 558 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 RN7SL429P-201ENST00000479090 223 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 RN7SL489P-201ENST00000486185 223 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 RN7SL327P-201ENST00000488659 223 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 AC091564.4-201ENST00000533934 2194 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 AC005498.1-201ENST00000592125 465 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 AL357078.3-201ENST00000607528 618 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 AL121757.2-201ENST00000611223 313 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 RN7SL853P-201ENST00000617250 223 ntBASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC9Q9Y3X0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 CDC27P3-201ENST00000635418 1910 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 RNU4-35P-201ENST00000362588 141 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 RNU6-72P-201ENST00000384285 79 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 MIR518D-201ENST00000385014 87 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 MT-TL1-201ENST00000386347 75 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC087650.1-201ENST00000431445 468 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC125238.1-201ENST00000448842 249 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC092001.1-201ENST00000453012 261 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC006026.2-201ENST00000457376 180 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 Y_RNA.687-201ENST00000516558 91 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 RNU6-1314P-201ENST00000517139 104 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AP004607.1-201ENST00000524456 203 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC010653.1-201ENST00000571108 881 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 SNORA62.6-201ENST00000606322 83 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 MIR7851-201ENST00000610611 160 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AL162274.2-201ENST00000614406 332 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 AC110774.1-201ENST00000623567 2018 ntBASIC4.92□□□□□ -1.62
CCDC9Q9Y3X0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 Y_RNA.72-201ENST00000362894 103 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 Y_RNA.167-201ENST00000363735 109 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 SNORD113-7-201ENST00000363762 77 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 U3.12-201ENST00000364498 214 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 SNORA32.2-201ENST00000384049 122 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AL513185.2-201ENST00000425543 193 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AL161651.1-201ENST00000440882 223 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 HIGD1AP2-201ENST00000446367 280 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms