Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 BNIP3P8-201ENST00000597863 560 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC091304.9-201ENST00000612091 226 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC025594.3-201ENST00000613068 790 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 MIR3199-2-201ENST00000636243 86 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 MTND5P42-201ENST00000637720 498 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC093536.2-201ENST00000565257 1406 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 ELF2P3-201ENST00000445099 1506 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
VPS54Q9P1Q0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
VPS54Q9P1Q0 RNU6-817P-201ENST00000391083 104 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AL513475.1-201ENST00000406602 315 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 RPL26P27-201ENST00000414397 437 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.55□□□□□ -2
VPS54Q9P1Q0 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 HMGB1P9-201ENST00000429856 646 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 CETN4P-201ENST00000432407 469 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC098831.1-201ENST00000440661 216 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
VPS54Q9P1Q0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.55□□□□□ -2
VPS54Q9P1Q0 USP9YP15-201ENST00000442391 422 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 MTND6P13-201ENST00000443510 523 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 RPS27AP8-201ENST00000452665 445 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 RNU6-953P-201ENST00000459154 107 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC107626.1-201ENST00000471084 183 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.55□□□□□ -2
VPS54Q9P1Q0 NDUFB4P2-201ENST00000509515 391 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AC098591.2-201ENST00000510152 315 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 RNU7-51P-201ENST00000516560 62 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 RNU6-143P-201ENST00000516942 93 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 COX6CP5-201ENST00000527162 228 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS54Q9P1Q0 MRPS36P5-201ENST00000551909 298 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AP002360.4-201ENST00000606980 481 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 AL603839.4-201ENST00000624658 1005 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 Z99571.1-201ENST00000636677 394 ntBASIC2.55□□□□□ -2
VPS54Q9P1Q0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS54Q9P1Q0 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS54Q9P1Q0 MTND4P35-201ENST00000604257 1375 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC010889.1-201ENST00000566193 2666 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 U8.3-201ENST00000363321 132 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU6-461P-201ENST00000364195 107 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU1-91P-201ENST00000364746 163 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNY4P34-201ENST00000364779 95 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 SNORA4.3-201ENST00000365564 137 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU6-658P-201ENST00000384606 106 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RPS3AP3-201ENST00000411933 242 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC114491.1-201ENST00000416095 246 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 ELOCP4-201ENST00000420090 333 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL353729.1-201ENST00000425044 720 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL591212.2-201ENST00000433923 257 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC104850.1-201ENST00000435940 476 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS54Q9P1Q0 SNRPGP9-201ENST00000456025 225 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RAP1BP2-201ENST00000478270 544 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 Y_RNA.689-201ENST00000516589 107 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU6-703P-201ENST00000516946 107 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU6-1220P-201ENST00000517126 108 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 RNU1-104P-201ENST00000517280 175 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC005771.1-201ENST00000585581 349 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL049779.4-201ENST00000604500 156 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC022893.3-201ENST00000607665 437 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC008250.2-201ENST00000615261 205 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC009831.4-201ENST00000620744 325 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC078883.4-201ENST00000623218 367 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AC097520.1-201ENST00000624435 385 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 AL512643.1-201ENST00000635735 524 ntBASIC2.54□□□□□ -2
VPS54Q9P1Q0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS54Q9P1Q0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 NACAP2-201ENST00000318548 624 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 U3.4-201ENST00000363352 213 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 SNORA67.1-201ENST00000364749 141 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 RN7SKP226-201ENST00000364912 300 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 RPL23AP32-201ENST00000395315 459 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 SNORA3.2-201ENST00000408221 125 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 RNU6-195P-201ENST00000411352 109 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC007064.1-201ENST00000412238 351 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC137499.1-201ENST00000427602 88 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC007182.2-201ENST00000489251 402 ntBASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.53□□□□□ -2
VPS54Q9P1Q0 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms