Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL513475.1-201ENST00000406602 315 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 MIR1252-201ENST00000408861 65 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RNU6-1156P-201ENST00000410365 100 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 EI24P1-201ENST00000416584 867 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RPL27AP8-201ENST00000424277 446 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AL591419.1-201ENST00000427423 339 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RPS15AP10-201ENST00000432472 382 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 CECR9-201ENST00000453421 199 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 FABP5P15-201ENST00000453566 214 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AL133162.1-201ENST00000463228 453 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AC010655.3-201ENST00000478818 450 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 RPL21P13-201ENST00000488305 481 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 AL121917.1-203ENST00000605534 577 ntBASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC87Q9NVE4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 MTND5P27-201ENST00000428871 1720 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 RNY1P16-201ENST00000363063 111 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.485-201ENST00000384395 102 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 MIR218-2-201ENST00000385006 110 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AL591034.2-201ENST00000402839 359 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AL035423.1-201ENST00000420331 213 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 HMGB1P22-201ENST00000505315 124 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 RPL21P7-201ENST00000557463 483 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 MED28P6-201ENST00000558776 231 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 MIR4272-201ENST00000635924 64 ntBASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
CCDC87Q9NVE4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.245-201ENST00000364493 95 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 SNORA63.7-201ENST00000365579 123 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.526-201ENST00000384572 110 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 Z85995.1-201ENST00000415547 335 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AL139247.1-201ENST00000422768 325 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AL590383.1-201ENST00000428602 75 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 CYCSP32-201ENST00000440548 321 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC133134.1-201ENST00000466800 359 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC106707.2-201ENST00000484182 374 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 RN7SL283P-201ENST00000489055 303 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 RPL22P13-201ENST00000493291 347 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC105758.1-201ENST00000506038 399 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC104619.4-201ENST00000510773 249 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 AL355810.1-201ENST00000614629 552 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC027290.2-201ENST00000623210 18662 ntBASIC5□□□□□ -1.61
CCDC87Q9NVE4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC87Q9NVE4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 RNU6-450P-201ENST00000364654 107 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 U8.8-201ENST00000365399 135 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 TOMM20P4-201ENST00000427861 435 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 OSTCP8-201ENST00000445117 448 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 U8.21-201ENST00000459536 136 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 RPL21P11-201ENST00000461458 483 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 RPL7P5-201ENST00000471472 736 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.668-201ENST00000516233 93 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 RNA5SP291-201ENST00000517222 105 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AC144568.1-201ENST00000520139 137 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AC100770.1-201ENST00000532310 322 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 CBX3P8-201ENST00000532412 525 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms