Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 RNU6-859P-201ENST00000362728 107 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 U3.37-201ENST00000408528 213 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 RPL23AP11-201ENST00000475260 469 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AF131216.2-201ENST00000512316 564 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 Y_RNA.672-201ENST00000516289 104 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 HMGB1P41-201ENST00000520234 440 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 MIR3682-201ENST00000581338 84 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AL138889.2-201ENST00000603883 242 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AC105129.3-201ENST00000605455 485 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 OR2AS2P-201ENST00000606902 342 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AC069234.5-201ENST00000611056 416 ntBASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.5□□□□□ -1.85
CHMP4AQ9BY43 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC103710.2-202ENST00000641454 2853 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 SNORA6-201ENST00000384033 151 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 UBE2V1P2-201ENST00000397758 440 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 RNU4-72P-201ENST00000410754 173 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 Y_RNA.623-201ENST00000411128 95 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 NUP35P1-201ENST00000422734 947 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC003982.1-202ENST00000469928 248 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 AC107871.2-201ENST00000612894 502 ntBASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
CHMP4AQ9BY43 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 SNORD114-19-201ENST00000363072 75 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 MIR558-201ENST00000384920 94 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 RPL23AP32-201ENST00000395315 459 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 Y_RNA.598-201ENST00000410480 95 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 CALM2P2-201ENST00000428512 440 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 RPS29P6-201ENST00000438196 145 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 RN7SKP132-201ENST00000516001 208 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC118273.2-201ENST00000532092 465 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 MIR548AC-201ENST00000585049 88 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC092354.1-201ENST00000606057 376 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AL451064.1-201ENST00000607718 471 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 AC092608.2-201ENST00000624427 218 ntBASIC3.48□□□□□ -1.85
CHMP4AQ9BY43 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AC062016.1-201ENST00000355719 319 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 RNU2-39P-201ENST00000410604 198 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AL365338.1-201ENST00000422282 858 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AL136380.1-201ENST00000447970 162 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 SNORD109B-201ENST00000458961 67 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 SNORD109A-201ENST00000459128 67 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 SMURF2P1-201ENST00000514992 481 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 RNA5SP282-201ENST00000516355 108 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AC090136.1-201ENST00000520009 240 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 AC012409.4-201ENST00000612923 249 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.47□□□□□ -1.85
CHMP4AQ9BY43 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.46□□□□□ -1.85
CHMP4AQ9BY43 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 MIR95-201ENST00000385072 81 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 SNORD88.1-201ENST00000408684 91 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL365400.1-201ENST00000431854 640 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 MTND1P30-201ENST00000441241 901 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL161788.1-201ENST00000441805 169 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AC004263.1-201ENST00000479327 332 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 MTCYBP35-201ENST00000503630 1137 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 MTND4P2-201ENST00000507767 1203 ntBASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.46□□□□□ -1.86
CHMP4AQ9BY43 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms