Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 Y_RNA.689-201ENST00000516589 107 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RNU6-56P-201ENST00000516986 93 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 MTCYBP20-201ENST00000524239 1129 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AP000867.2-201ENST00000532468 320 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 ADI1P3-201ENST00000549509 470 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 MIR1273C-201ENST00000578669 77 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC008521.1-201ENST00000587471 187 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC025449.1-201ENST00000603896 529 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AP001330.5-201ENST00000607176 411 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AP001596.2-201ENST00000608410 312 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 SEPT14P19-203ENST00000633205 211 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 OR5AK4P-201ENST00000635912 903 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 LRRC77P-213ENST00000637727 880 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC099654.12-201ENST00000639868 649 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RNU6-778P-201ENST00000363269 103 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RNU6-288P-201ENST00000363690 104 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 SNORD115-7-201ENST00000365306 82 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 U8.9-201ENST00000365667 134 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RNU6-198P-201ENST00000384258 104 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 Y_RNA.481-201ENST00000384373 102 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AL360182.1-201ENST00000397433 468 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RNU4-55P-201ENST00000410731 137 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RPL26P27-201ENST00000414397 437 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 BRK1P2-201ENST00000442875 223 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RN7SL283P-201ENST00000489055 303 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 RPL9P6-201ENST00000492764 598 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC010486.1-201ENST00000511793 424 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AL355598.1-201ENST00000604169 202 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC116312.1-201ENST00000606841 314 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC007684.1-201ENST00000609671 477 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC004852.3-201ENST00000614131 326 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AC073308.1-201ENST00000623696 305 ntBASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC3Q9BQI4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 ZNF680P1-201ENST00000436625 1469 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 RNU4-82P-201ENST00000362443 140 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 MIR512-1-201ENST00000384913 84 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 RN7SKP123-201ENST00000410732 291 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC114781.4-201ENST00000513707 639 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 RNA5SP165-201ENST00000517142 115 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 SNORA31.21-201ENST00000517180 77 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 RNU6-1315P-201ENST00000517187 99 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AP001893.2-201ENST00000526949 202 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 NACAP3-201ENST00000552100 481 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC245505.1-201ENST00000556398 224 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AL391261.3-201ENST00000557194 520 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 MIR15A-201ENST00000607334 83 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC013412.1-201ENST00000610687 192 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC130324.3-201ENST00000614165 542 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AL359880.1-201ENST00000621879 266 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 AC011155.2-201ENST00000623202 216 ntBASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC3Q9BQI4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 Y_RNA.41-201ENST00000362646 102 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 SNORA51.4-201ENST00000364993 124 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RNU6-1027P-201ENST00000383998 107 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 MTCO3P40-201ENST00000392516 676 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AL445529.1-201ENST00000398713 389 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 MIR887-201ENST00000401258 79 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AL592045.1-201ENST00000429867 352 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 ARL5AP4-201ENST00000430731 512 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AL451074.3-201ENST00000437709 472 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RPS15AP9-201ENST00000439856 381 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RPL23AP58-201ENST00000440453 469 ntBASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC3Q9BQI4 RPL12P25-201ENST00000455592 494 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms