Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR4446-201ENST00000578505 67 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 MIR3670-2-201ENST00000582974 65 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 MIR3670-1-201ENST00000584160 65 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 MIR3670-3-201ENST00000584855 65 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 AC034229.4-201ENST00000607861 441 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 AC024933.1-201ENST00000608472 348 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 MIR3670-4-201ENST00000612260 65 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 AC130324.3-201ENST00000614165 542 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 AL356266.1-201ENST00000623311 483 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 CDC27P3-201ENST00000635418 1910 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 Z75746.1-201ENST00000440243 2080 ntBASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HDDC3Q8N4P3 ZNF271P-202ENST00000465539 1970 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 Z82209.1-201ENST00000422141 2135 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 RNU6-501P-201ENST00000364072 100 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 RNU4-28P-201ENST00000364739 141 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 RNU6-946P-201ENST00000383878 107 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC013410.2-201ENST00000422627 201 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 RPL7P12-201ENST00000446719 750 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC104058.1-201ENST00000448028 297 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 LINC00888-204ENST00000487386 421 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 CKS1BP2-201ENST00000497342 240 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AL049779.4-201ENST00000604500 156 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC103710.2-201ENST00000609912 942 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC091953.2-201ENST00000623979 160 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC007671.2-201ENST00000637344 619 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 AC131280.1-202ENST00000624067 4211 ntBASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HDDC3Q8N4P3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
HDDC3Q8N4P3 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RNA5SP456-201ENST00000364002 114 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 Z98749.2-208ENST00000381646 500 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 Y_RNA.534-201ENST00000384599 112 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 MIR1289-2-201ENST00000408360 111 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RNU6-1025P-201ENST00000410629 104 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RNU2-63P-201ENST00000410792 194 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC097463.2-201ENST00000421074 142 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL591704.1-201ENST00000432574 275 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL606517.1-201ENST00000446914 387 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC009961.3-201ENST00000449832 765 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC011753.1-201ENST00000451001 220 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 MTND1P12-201ENST00000455231 147 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RPL21P99-201ENST00000480369 423 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 MRPL42P6-201ENST00000486397 371 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC234781.5-201ENST00000508429 271 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 TBCAP3-201ENST00000512475 312 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RNU7-51P-201ENST00000516560 62 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC021269.2-201ENST00000532318 330 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 MIR1273D-201ENST00000577266 86 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 MIR5092-201ENST00000583139 88 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL359999.1-201ENST00000604513 294 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC092953.2-201ENST00000608000 699 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC245884.12-201ENST00000615364 59 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC010297.1-201ENST00000623948 149 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AC092192.1-201ENST00000633154 1018 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 AL445523.1-201ENST00000451184 1362 ntBASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HDDC3Q8N4P3 RNU6-1214P-201ENST00000363650 109 ntBASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 RNU5F-7P-201ENST00000363696 115 ntBASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 SNORA72.3-201ENST00000365074 132 ntBASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 RNU4-26P-201ENST00000410270 107 ntBASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 RNU4-72P-201ENST00000410754 173 ntBASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.45□□□□□ -2.02
HDDC3Q8N4P3 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms