Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 SNORA4.3-201ENST00000365564 137 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR301A-201ENST00000385261 86 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR147B-201ENST00000390185 80 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RNU4-72P-201ENST00000410754 173 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 PTGES3P4-201ENST00000426243 356 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AL591704.1-201ENST00000432574 275 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC004383.1-201ENST00000438135 289 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 EPS15P1-201ENST00000448836 336 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RN7SKP287-201ENST00000516546 266 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RNU6-572P-201ENST00000516724 80 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RNA5SP337-201ENST00000517007 109 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AP005902.1-201ENST00000521358 186 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC121758.2-201ENST00000553271 193 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR4782-201ENST00000577987 79 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR5694-201ENST00000581190 76 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR4765-201ENST00000585007 77 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 NRBF2P1-201ENST00000587407 859 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 RPS15AP11-201ENST00000594193 385 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AL359999.1-201ENST00000604513 294 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC093424.1-201ENST00000604999 338 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AL031775.1-201ENST00000607014 887 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 uc_338.14-201ENST00000613162 166 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC010678.1-201ENST00000614118 713 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 AC027807.2-201ENST00000616099 408 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 MIR6134-201ENST00000617606 109 ntBASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC40Q4G0X9 CDC27P3-201ENST00000635418 1910 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 MTND5P30-201ENST00000452896 1731 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 CKAP2P1-201ENST00000555477 2049 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 Y_RNA.111-201ENST00000363248 100 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AL591416.1-201ENST00000404015 867 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC107081.1-201ENST00000414975 361 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 CYCSP48-201ENST00000417124 323 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 RPL30P4-201ENST00000429309 333 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 Z98742.2-201ENST00000431564 187 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC236972.1-201ENST00000433225 199 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 FABP5P14-201ENST00000437273 393 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AP001324.2-201ENST00000461163 319 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC109927.2-201ENST00000506416 303 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC114781.4-201ENST00000513707 639 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 SNORA31.19-201ENST00000517079 126 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 ZNF321P-202ENST00000550843 495 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 SNORD14A-201ENST00000606526 91 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 RNU6-87P-201ENST00000607561 108 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 AC131159.1-201ENST00000621854 213 ntBASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC40Q4G0X9 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 RNU4-1-201ENST00000363925 141 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 RNU6-190P-201ENST00000384154 102 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 SNORA51.11-201ENST00000384442 131 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AP000797.1-201ENST00000478870 387 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC007182.2-201ENST00000489251 402 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC005178.1-201ENST00000508392 440 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 RNU7-51P-201ENST00000516560 62 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 RNU6-1315P-201ENST00000517187 99 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC009127.3-201ENST00000570531 403 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 MIR3162-201ENST00000581818 82 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC174048.1-201ENST00000603389 144 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC138749.5-201ENST00000611461 208 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC116165.2-201ENST00000616705 206 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC023510.2-201ENST00000622162 746 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC025034.2-201ENST00000623264 286 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AC243829.7-201ENST00000633081 225 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AL359854.1-201ENST00000614203 1594 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 AL109809.4-201ENST00000603520 2185 ntBASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC40Q4G0X9 TEX21P-201ENST00000447107 1476 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms