Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNU11-3P-201ENST00000391111 133 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC0.91□□□□□ -2.26
FOXA3P55318 AL121882.1-201ENST00000422893 417 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 TOMM22P2-201ENST00000430735 237 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.91□□□□□ -2.26
FOXA3P55318 SNORD13-201ENST00000459299 104 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC112771.1-201ENST00000463581 102 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC005908.1-201ENST00000468701 347 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 RNA5SP445-201ENST00000515889 115 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 RNU6-927P-201ENST00000516199 100 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC022861.1-201ENST00000522981 663 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AP003034.1-201ENST00000534621 422 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.91□□□□□ -2.26
FOXA3P55318 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC0.91□□□□□ -2.26
FOXA3P55318 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC0.91□□□□□ -2.26
FOXA3P55318 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.91□□□□□ -2.26
FOXA3P55318 AC067805.1-201ENST00000559344 470 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC0.91□□□□□ -2.26
FOXA3P55318 RN7SL622P-201ENST00000585292 275 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC069304.2-201ENST00000605154 435 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 NDUFA8P1-201ENST00000605525 367 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.91□□□□□ -2.26
FOXA3P55318 MIR8074-201ENST00000615081 81 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 AC091965.5-201ENST00000624785 342 ntBASIC0.91□□□□□ -2.26
FOXA3P55318 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA3P55318 ATM-230ENST00000640388 578 ntTSL 5 BASIC0.91□□□□□ -2.26
FOXA3P55318 AC002543.1-201ENST00000299783 1954 ntBASIC0.9□□□□□ -2.26
FOXA3P55318 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
FOXA3P55318 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
FOXA3P55318 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA3P55318 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
FOXA3P55318 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 SNORD14D-201ENST00000384390 87 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 MIR597-201ENST00000384968 97 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 MIR618-201ENST00000385287 98 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 SNORA67.5-201ENST00000391036 107 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 TXNP7-201ENST00000406296 293 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 RN7SKP284-201ENST00000411002 343 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 RNU6-575P-201ENST00000411326 105 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AL591704.2-201ENST00000421658 181 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 MTCO2P5-201ENST00000422621 426 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 AC010153.1-201ENST00000432862 727 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 USP9YP35-201ENST00000435696 412 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.9□□□□□ -2.27
FOXA3P55318 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 AC017099.1-201ENST00000448261 1028 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 RNU7-140P-201ENST00000459546 60 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA3P55318 AC004223.1-201ENST00000479840 271 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AKIRIN2P1-201ENST00000505898 352 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA3P55318 RNU6-902P-201ENST00000517212 91 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
FOXA3P55318 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 RPL21P5-201ENST00000554662 472 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 DNAJC19P9-201ENST00000555084 351 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA3P55318 MIR3660-201ENST00000584845 100 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AC073544.2-201ENST00000601155 540 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 AL139344.1-201ENST00000605228 195 ntBASIC0.9□□□□□ -2.27
FOXA3P55318 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
FOXA3P55318 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.9□□□□□ -2.27
FOXA3P55318 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 RNU6-28P-201ENST00000362378 107 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 SNORD14B-201ENST00000364533 90 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 SNORA25.8-201ENST00000364831 128 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC083799.1-201ENST00000366451 910 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 Y_RNA.548-201ENST00000384656 105 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
FOXA3P55318 SNORA40.6-201ENST00000391153 128 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 RPS15AP9-201ENST00000439856 381 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 CR769776.1-201ENST00000441254 787 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 COX6CP18-201ENST00000448769 222 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC092001.1-201ENST00000453012 261 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 MTND1P9-201ENST00000453775 944 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 snoU13.8-201ENST00000458890 104 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 snoU13.9-201ENST00000458927 103 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 AC019288.1-201ENST00000557918 224 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 ADAM3B-201ENST00000569937 840 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA3P55318 AL390208.1-201ENST00000605885 644 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 RNU6-91P-201ENST00000607774 107 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC013412.1-201ENST00000610687 192 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 AC097655.1-201ENST00000635075 318 ntBASIC0.89□□□□□ -2.27
FOXA3P55318 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA3P55318 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
FOXA3P55318 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms