Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC023824.2-201ENST00000566185 400 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AGGF1P5-201ENST00000567900 919 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 MTND1P8-201ENST00000571424 950 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 MIR3122-201ENST00000577243 73 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 MIR4293-201ENST00000584305 78 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AP000403.1-201ENST00000603349 851 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AL161798.1-201ENST00000604630 131 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AC068944.2-201ENST00000610373 403 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 MIR8081-201ENST00000611533 95 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
FOXA1P55317 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA1P55317 AC110491.1-201ENST00000562191 2010 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA1P55317 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.62□□□□□ -2.15
FOXA1P55317 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.62□□□□□ -2.15
FOXA1P55317 AC010889.1-201ENST00000566193 2666 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
FOXA1P55317 RNU6-931P-201ENST00000363850 107 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.61□□□□□ -2.15
FOXA1P55317 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 NDUFS5P4-201ENST00000412983 318 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA1P55317 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXA1P55317 VPS26BP1-201ENST00000417155 755 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AL358453.1-201ENST00000422522 250 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXA1P55317 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXA1P55317 MTND1P32-201ENST00000433043 938 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 LARP1BP3-201ENST00000437229 869 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 OSTCP8-201ENST00000445117 448 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC104058.1-201ENST00000448028 297 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXA1P55317 AC104685.1-201ENST00000502445 371 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 HSPE1P23-201ENST00000509838 286 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC022447.1-201ENST00000515358 464 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC068587.4-201ENST00000533893 186 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.61□□□□□ -2.15
FOXA1P55317 MTND4P33-201ENST00000556706 766 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1.61□□□□□ -2.15
FOXA1P55317 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXA1P55317 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.61□□□□□ -2.15
FOXA1P55317 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA1P55317 AL355472.4-201ENST00000610233 626 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC092106.3-201ENST00000611308 722 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC005332.10-201ENST00000612725 619 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA1P55317 MIR3199-2-201ENST00000636243 86 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC103706.2-201ENST00000638080 240 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC006927.4-201ENST00000639187 543 ntBASIC1.61□□□□□ -2.15
FOXA1P55317 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.61□□□□□ -2.15
FOXA1P55317 AC080128.1-201ENST00000474389 1917 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC004520.1-201ENST00000608362 1413 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA1P55317 UBE2L2-201ENST00000254302 429 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 RNU6-512P-201ENST00000364438 103 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 RNU2-68P-201ENST00000410878 191 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA1P55317 SSR1P2-201ENST00000415208 787 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC096649.2-201ENST00000416186 393 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 ZNF90P2-204ENST00000419323 1075 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA1P55317 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA1P55317 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA1P55317 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
FOXA1P55317 HMGB1P9-201ENST00000429856 646 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AL603825.1-201ENST00000438481 80 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC098831.1-201ENST00000440661 216 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA1P55317 HMGN2P23-201ENST00000456759 269 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AL121769.1-201ENST00000469473 401 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 RPL23AP42-201ENST00000471152 471 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 DEFB108A-201ENST00000530110 222 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 NACAP3-201ENST00000552100 481 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA1P55317 AC091965.4-201ENST00000607691 587 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AL589743.7-201ENST00000612637 233 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC025594.3-201ENST00000613068 790 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA1P55317 AP001486.3-201ENST00000615334 372 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AP002791.1-201ENST00000623291 381 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC079416.3-201ENST00000624479 549 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 AC091965.5-201ENST00000624785 342 ntBASIC1.6□□□□□ -2.15
FOXA1P55317 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
FOXA1P55317 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA1P55317 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
FOXA1P55317 MTND4P27-201ENST00000450813 1354 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 MTND4P16-201ENST00000466108 1367 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
FOXA1P55317 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
FOXA1P55317 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
FOXA1P55317 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA1P55317 RNU5A-8P-201ENST00000364102 114 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 SNORA3A-201ENST00000364113 130 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA1P55317 MIR583-201ENST00000384846 75 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 MIR513B-201ENST00000385136 84 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 U8.13-201ENST00000390842 128 ntBASIC1.59□□□□□ -2.15
FOXA1P55317 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA1P55317 RPL26P27-201ENST00000414397 437 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms