Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Z99129.1-201ENST00000612510 255 ntBASIC2.57□□□□□ -2
CDX1P47902 uc_338.11-201ENST00000619132 160 ntBASIC2.57□□□□□ -2
CDX1P47902 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.57□□□□□ -2
CDX1P47902 HSPA8P4-201ENST00000511877 1920 ntBASIC2.57□□□□□ -2
CDX1P47902 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CDX1P47902 AC093536.2-201ENST00000565257 1406 ntBASIC2.57□□□□□ -2
CDX1P47902 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.57□□□□□ -2
CDX1P47902 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.56□□□□□ -2
CDX1P47902 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.56□□□□□ -2
CDX1P47902 RNA5SP197-201ENST00000363357 119 ntBASIC2.56□□□□□ -2
CDX1P47902 RNU6-371P-201ENST00000364283 108 ntBASIC2.56□□□□□ -2
CDX1P47902 OR5H15-201ENST00000383696 930 ntBASIC2.56□□□□□ -2
CDX1P47902 Y_RNA.559-201ENST00000384686 107 ntBASIC2.56□□□□□ -2
CDX1P47902 RNU6-606P-201ENST00000384721 111 ntBASIC2.56□□□□□ -2
CDX1P47902 MIR34A-201ENST00000385130 110 ntBASIC2.56□□□□□ -2
CDX1P47902 RNU6-550P-201ENST00000391057 101 ntBASIC2.56□□□□□ -2
CDX1P47902 AL627311.1-201ENST00000431514 115 ntBASIC2.56□□□□□ -2
CDX1P47902 AL596276.1-201ENST00000434465 418 ntBASIC2.56□□□□□ -2
CDX1P47902 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.56□□□□□ -2
CDX1P47902 ATP5C1P1-201ENST00000441945 895 ntBASIC2.56□□□□□ -2
CDX1P47902 AC115115.1-201ENST00000449927 248 ntBASIC2.56□□□□□ -2
CDX1P47902 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.56□□□□□ -2
CDX1P47902 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.56□□□□□ -2
CDX1P47902 BX510359.1-201ENST00000456973 237 ntBASIC2.56□□□□□ -2
CDX1P47902 AC008571.1-201ENST00000467232 300 ntBASIC2.56□□□□□ -2
CDX1P47902 AP004217.1-201ENST00000480579 346 ntBASIC2.56□□□□□ -2
CDX1P47902 AC008716.1-201ENST00000511084 513 ntBASIC2.56□□□□□ -2
CDX1P47902 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.56□□□□□ -2
CDX1P47902 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.56□□□□□ -2
CDX1P47902 SCARNA11.3-201ENST00000517276 130 ntBASIC2.56□□□□□ -2
CDX1P47902 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.56□□□□□ -2
CDX1P47902 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.56□□□□□ -2
CDX1P47902 AC234778.2-201ENST00000566241 354 ntBASIC2.56□□□□□ -2
CDX1P47902 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.56□□□□□ -2
CDX1P47902 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.56□□□□□ -2
CDX1P47902 AC087045.1-201ENST00000605856 382 ntBASIC2.56□□□□□ -2
CDX1P47902 AC104073.3-201ENST00000610942 955 ntBASIC2.56□□□□□ -2
CDX1P47902 MIR7112-201ENST00000616126 65 ntBASIC2.56□□□□□ -2
CDX1P47902 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.56□□□□□ -2
CDX1P47902 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.56□□□□□ -2
CDX1P47902 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.56□□□□□ -2
CDX1P47902 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.56□□□□□ -2
CDX1P47902 MIR3651-201ENST00000630427 90 ntBASIC2.56□□□□□ -2
CDX1P47902 ZNF680P1-201ENST00000436625 1469 ntBASIC2.56□□□□□ -2
CDX1P47902 CDC27P3-201ENST00000635418 1910 ntBASIC2.56□□□□□ -2
CDX1P47902 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CDX1P47902 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.55□□□□□ -2
CDX1P47902 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.55□□□□□ -2
CDX1P47902 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CDX1P47902 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CDX1P47902 SNORD3E-201ENST00000362899 217 ntBASIC2.55□□□□□ -2
CDX1P47902 Y_RNA.194-201ENST00000363985 102 ntBASIC2.55□□□□□ -2
CDX1P47902 SNORD56.5-201ENST00000364281 72 ntBASIC2.55□□□□□ -2
CDX1P47902 RNU4-40P-201ENST00000364351 143 ntBASIC2.55□□□□□ -2
CDX1P47902 RNU6-1083P-201ENST00000384022 107 ntBASIC2.55□□□□□ -2
CDX1P47902 MIR10A-201ENST00000385043 110 ntBASIC2.55□□□□□ -2
CDX1P47902 MIR483-201ENST00000385070 76 ntBASIC2.55□□□□□ -2
CDX1P47902 MIR181B1-201ENST00000385240 110 ntBASIC2.55□□□□□ -2
CDX1P47902 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.55□□□□□ -2
CDX1P47902 EEF1A1P40-201ENST00000412883 573 ntBASIC2.55□□□□□ -2
CDX1P47902 AL031779.1-201ENST00000415663 330 ntBASIC2.55□□□□□ -2
CDX1P47902 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.55□□□□□ -2
CDX1P47902 USP9YP14-201ENST00000430663 563 ntBASIC2.55□□□□□ -2
CDX1P47902 AC000111.3-201ENST00000433478 193 ntBASIC2.55□□□□□ -2
CDX1P47902 RPS15AP7-201ENST00000439294 405 ntBASIC2.55□□□□□ -2
CDX1P47902 Z99127.3-201ENST00000448158 395 ntBASIC2.55□□□□□ -2
CDX1P47902 snoU109.2-201ENST00000459316 135 ntBASIC2.55□□□□□ -2
CDX1P47902 AC107626.1-201ENST00000471084 183 ntBASIC2.55□□□□□ -2
CDX1P47902 AC109925.1-201ENST00000478069 331 ntBASIC2.55□□□□□ -2
CDX1P47902 HMGB1P30-201ENST00000492455 606 ntBASIC2.55□□□□□ -2
CDX1P47902 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
CDX1P47902 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.55□□□□□ -2
CDX1P47902 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.55□□□□□ -2
CDX1P47902 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.55□□□□□ -2
CDX1P47902 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.55□□□□□ -2
CDX1P47902 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.55□□□□□ -2
CDX1P47902 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CDX1P47902 AC009063.1-201ENST00000563342 702 ntBASIC2.55□□□□□ -2
CDX1P47902 AC025678.1-201ENST00000567861 338 ntBASIC2.55□□□□□ -2
CDX1P47902 AC004223.2-201ENST00000590309 544 ntBASIC2.55□□□□□ -2
CDX1P47902 AL162713.1-201ENST00000604480 262 ntBASIC2.55□□□□□ -2
CDX1P47902 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.55□□□□□ -2
CDX1P47902 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
CDX1P47902 uc_338.1-201ENST00000612113 180 ntBASIC2.55□□□□□ -2
CDX1P47902 AC093783.1-201ENST00000612976 329 ntBASIC2.55□□□□□ -2
CDX1P47902 AP001486.3-201ENST00000615334 372 ntBASIC2.55□□□□□ -2
CDX1P47902 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.55□□□□□ -2
CDX1P47902 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CDX1P47902 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.54□□□□□ -2
CDX1P47902 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.54□□□□□ -2
CDX1P47902 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.54□□□□□ -2
CDX1P47902 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
CDX1P47902 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CDX1P47902 Y_RNA.1-201ENST00000352915 104 ntBASIC2.54□□□□□ -2
CDX1P47902 RNU6-858P-201ENST00000362436 107 ntBASIC2.54□□□□□ -2
CDX1P47902 Y_RNA.159-201ENST00000363674 87 ntBASIC2.54□□□□□ -2
CDX1P47902 Y_RNA.436-201ENST00000384097 102 ntBASIC2.54□□□□□ -2
CDX1P47902 RNU6-1103P-201ENST00000384150 107 ntBASIC2.54□□□□□ -2
CDX1P47902 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.54□□□□□ -2
CDX1P47902 RPL19P1-201ENST00000411635 428 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms