Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC090616.3-201ENST00000582184 217 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
BRCA1P38398 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
BRCA1P38398 RNU4-52P-201ENST00000384209 138 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 RNU6-920P-201ENST00000410926 92 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 RPS24P7-201ENST00000416921 246 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL591704.1-201ENST00000432574 275 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 AL358794.1-201ENST00000445689 381 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AL049829.1-201ENST00000465411 156 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.94□□□□□ -2.1
BRCA1P38398 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
BRCA1P38398 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.94□□□□□ -2.1
BRCA1P38398 PSMA3P-201ENST00000555485 635 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.94□□□□□ -2.1
BRCA1P38398 AC174048.1-201ENST00000603389 144 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 SNHG22-203ENST00000617833 660 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
BRCA1P38398 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.94□□□□□ -2.1
BRCA1P38398 MTND5P30-201ENST00000452896 1731 ntBASIC1.94□□□□□ -2.1
BRCA1P38398 RNU6-462P-201ENST00000362659 105 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 RNU6-413P-201ENST00000384115 107 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 Y_RNA.465-201ENST00000384293 102 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 FGF7P5-201ENST00000441829 291 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 AL441985.1-201ENST00000457727 251 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 RN7SL274P-201ENST00000492268 272 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 AC096571.1-202ENST00000506634 735 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 AC007375.1-201ENST00000554513 578 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.93□□□□□ -2.1
BRCA1P38398 AP000403.1-201ENST00000603349 851 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.93□□□□□ -2.1
BRCA1P38398 AC009269.6-201ENST00000621778 588 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 MIR203B-201ENST00000636080 86 ntBASIC1.93□□□□□ -2.1
BRCA1P38398 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
BRCA1P38398 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
BRCA1P38398 RNU6-778P-201ENST00000363269 103 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RNU6-1284P-201ENST00000363701 100 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RNU1-93P-201ENST00000364704 169 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 SNORD116.1-201ENST00000365628 92 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
BRCA1P38398 U6atac.2-201ENST00000408644 118 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RN7SKP266-201ENST00000410232 287 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 SEPT2P1-201ENST00000419651 180 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.92□□□□□ -2.1
BRCA1P38398 DDX3P2-201ENST00000446138 111 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.92□□□□□ -2.1
BRCA1P38398 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.92□□□□□ -2.1
BRCA1P38398 SNORD97-201ENST00000459187 142 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC107626.1-201ENST00000471084 183 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.92□□□□□ -2.1
BRCA1P38398 RPL23AP41-201ENST00000484754 458 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC093281.2-201ENST00000510153 597 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RNU5B-3P-201ENST00000516601 115 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.92□□□□□ -2.1
BRCA1P38398 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.92□□□□□ -2.1
BRCA1P38398 AL049777.1-201ENST00000622740 518 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 MIR3199-2-201ENST00000636243 86 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
BRCA1P38398 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
BRCA1P38398 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.92□□□□□ -2.1
BRCA1P38398 RNA5SP325-201ENST00000363756 130 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
BRCA1P38398 ANAPC10P1-201ENST00000395991 556 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RNU2-62P-201ENST00000410868 191 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 MTCO2P21-201ENST00000419780 677 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC244035.1-201ENST00000430042 390 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AL512844.2-201ENST00000433990 593 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 COX7BP2-201ENST00000437976 242 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.92□□□□□ -2.1
BRCA1P38398 AC010631.1-201ENST00000474150 156 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 RNU6-143P-201ENST00000516942 93 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC005951.2-201ENST00000576282 495 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.92□□□□□ -2.1
BRCA1P38398 AC107075.1-201ENST00000613695 314 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC091965.5-201ENST00000624785 342 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 AC093536.2-201ENST00000565257 1406 ntBASIC1.92□□□□□ -2.1
BRCA1P38398 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.91□□□□□ -2.1
BRCA1P38398 SNORA16.1-201ENST00000364597 132 ntBASIC1.91□□□□□ -2.1
BRCA1P38398 RNU6-723P-201ENST00000383973 107 ntBASIC1.91□□□□□ -2.1
BRCA1P38398 AL355143.1-201ENST00000407101 841 ntBASIC1.91□□□□□ -2.1
BRCA1P38398 RN7SKP158-201ENST00000410453 326 ntBASIC1.91□□□□□ -2.1
BRCA1P38398 TIMM9P1-201ENST00000436122 256 ntBASIC1.91□□□□□ -2.1
BRCA1P38398 MTCO1P53-201ENST00000441633 699 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms