Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC011998.1-201ENST00000433403 117 ntBASIC3.78□□□□□ -1.8
MSX2P35548 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX2P35548 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 DAP3P1-201ENST00000441522 278 ntBASIC3.78□□□□□ -1.8
MSX2P35548 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX2P35548 DYNLT3P2-201ENST00000442517 295 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RPS24P13-201ENST00000442520 397 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL359073.1-201ENST00000448036 403 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RPL23AP31-201ENST00000456160 467 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RPL29P14-201ENST00000495837 428 ntBASIC3.78□□□□□ -1.8
MSX2P35548 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX2P35548 SNORA70.14-201ENST00000516205 110 ntBASIC3.78□□□□□ -1.8
MSX2P35548 Y_RNA.715-201ENST00000517082 110 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RN7SKP92-201ENST00000517266 244 ntBASIC3.78□□□□□ -1.8
MSX2P35548 IGKV2D-23-201ENST00000518179 286 ntBASIC3.78□□□□□ -1.8
MSX2P35548 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.78□□□□□ -1.8
MSX2P35548 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.78□□□□□ -1.8
MSX2P35548 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX2P35548 TVP23BP1-201ENST00000557500 617 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC025627.2-201ENST00000576220 160 ntBASIC3.78□□□□□ -1.8
MSX2P35548 MIR5188-201ENST00000583467 113 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL109918.3-201ENST00000603072 338 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC016727.2-201ENST00000603988 621 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL591516.1-201ENST00000611326 274 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC023043.4-201ENST00000612081 449 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC034102.8-201ENST00000615146 484 ntBASIC3.78□□□□□ -1.8
MSX2P35548 HMGB1P24-202ENST00000615653 685 ntBASIC3.78□□□□□ -1.8
MSX2P35548 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 AC009812.4-201ENST00000569134 1805 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.78□□□□□ -1.8
MSX2P35548 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
MSX2P35548 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.78□□□□□ -1.81
MSX2P35548 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
MSX2P35548 RNU4-42P-201ENST00000364738 142 ntBASIC3.77□□□□□ -1.81
MSX2P35548 SNORD14.1-201ENST00000365609 90 ntBASIC3.77□□□□□ -1.81
MSX2P35548 Y_RNA.489-201ENST00000384410 101 ntBASIC3.77□□□□□ -1.81
MSX2P35548 MIR1251-201ENST00000408552 70 ntBASIC3.77□□□□□ -1.81
MSX2P35548 SNORA11-201ENST00000408789 128 ntBASIC3.77□□□□□ -1.81
MSX2P35548 RNU2-71P-201ENST00000411395 189 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.77□□□□□ -1.81
MSX2P35548 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.77□□□□□ -1.81
MSX2P35548 RPL7P2-201ENST00000427639 268 ntBASIC3.77□□□□□ -1.81
MSX2P35548 ARL5AP4-201ENST00000430731 512 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AL353997.1-201ENST00000432936 108 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.77□□□□□ -1.81
MSX2P35548 AL031274.1-201ENST00000450334 232 ntBASIC3.77□□□□□ -1.81
MSX2P35548 RPS23P7-201ENST00000466210 444 ntBASIC3.77□□□□□ -1.81
MSX2P35548 MLLT10P2-201ENST00000506434 249 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC113155.1-201ENST00000511141 769 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.77□□□□□ -1.81
MSX2P35548 GMPSP1-201ENST00000514075 579 ntBASIC3.77□□□□□ -1.81
MSX2P35548 RNU2-53P-201ENST00000516257 147 ntBASIC3.77□□□□□ -1.81
MSX2P35548 SNORA40.14-201ENST00000516543 86 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC007991.1-201ENST00000522680 631 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC023157.2-201ENST00000540596 141 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.77□□□□□ -1.81
MSX2P35548 PARP1P2-201ENST00000556806 195 ntBASIC3.77□□□□□ -1.81
MSX2P35548 FAM60BP-201ENST00000578364 658 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX2P35548 OR1M4P-201ENST00000589199 287 ntBASIC3.77□□□□□ -1.81
MSX2P35548 AL355810.1-201ENST00000614629 552 ntBASIC3.77□□□□□ -1.81
MSX2P35548 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX2P35548 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.77□□□□□ -1.81
MSX2P35548 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
MSX2P35548 AC010300.1-201ENST00000600671 5134 ntBASIC3.77□□□□□ -1.81
MSX2P35548 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSX2P35548 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSX2P35548 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSX2P35548 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 MAPK10-372ENST00000641954 3413 ntBASIC3.76□□□□□ -1.81
MSX2P35548 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.76□□□□□ -1.81
MSX2P35548 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 AL133383.2-201ENST00000622958 2336 ntBASIC3.76□□□□□ -1.81
MSX2P35548 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX2P35548 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 RNU6-1156P-201ENST00000410365 100 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AL451062.2-201ENST00000427515 271 ntBASIC3.76□□□□□ -1.81
MSX2P35548 RANP8-201ENST00000444720 713 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AC073910.1-201ENST00000445047 438 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
MSX2P35548 AC008958.1-201ENST00000511047 682 ntBASIC3.76□□□□□ -1.81
MSX2P35548 AC008716.1-201ENST00000511084 513 ntBASIC3.76□□□□□ -1.81
MSX2P35548 APOOP4-201ENST00000513530 597 ntBASIC3.76□□□□□ -1.81
MSX2P35548 RNU1-86P-201ENST00000516108 154 ntBASIC3.76□□□□□ -1.81
MSX2P35548 RNU6-1143P-201ENST00000516125 104 ntBASIC3.76□□□□□ -1.81
MSX2P35548 RNU6-927P-201ENST00000516199 100 ntBASIC3.76□□□□□ -1.81
MSX2P35548 RNU1-107P-201ENST00000516617 154 ntBASIC3.76□□□□□ -1.81
MSX2P35548 IGKV1-32-201ENST00000519290 311 ntBASIC3.76□□□□□ -1.81
MSX2P35548 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
MSX2P35548 AC040926.1-201ENST00000530195 238 ntBASIC3.76□□□□□ -1.81
MSX2P35548 CBX3P8-201ENST00000532412 525 ntBASIC3.76□□□□□ -1.81
MSX2P35548 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.76□□□□□ -1.81
MSX2P35548 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms