Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC106883.1-201ENST00000418805 562 ntBASIC1.85□□□□□ -2.11
USF1P22415 MTCO2P23-201ENST00000425216 680 ntBASIC1.85□□□□□ -2.11
USF1P22415 WARS2P1-201ENST00000429678 537 ntBASIC1.85□□□□□ -2.11
USF1P22415 AL592045.1-201ENST00000429867 352 ntBASIC1.85□□□□□ -2.11
USF1P22415 AC016691.1-201ENST00000441321 413 ntBASIC1.85□□□□□ -2.11
USF1P22415 AL009048.1-201ENST00000450437 298 ntBASIC1.85□□□□□ -2.11
USF1P22415 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.85□□□□□ -2.11
USF1P22415 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.85□□□□□ -2.11
USF1P22415 AC079804.2-201ENST00000490376 200 ntBASIC1.85□□□□□ -2.11
USF1P22415 MTND3P3-201ENST00000505004 126 ntBASIC1.85□□□□□ -2.11
USF1P22415 AC008526.1-201ENST00000509149 338 ntBASIC1.85□□□□□ -2.11
USF1P22415 AF213884.2-201ENST00000510417 903 ntBASIC1.85□□□□□ -2.11
USF1P22415 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.85□□□□□ -2.11
USF1P22415 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.85□□□□□ -2.11
USF1P22415 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USF1P22415 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.85□□□□□ -2.11
USF1P22415 MIR4782-201ENST00000577987 79 ntBASIC1.85□□□□□ -2.11
USF1P22415 AC007363.1-201ENST00000604736 620 ntBASIC1.85□□□□□ -2.11
USF1P22415 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.85□□□□□ -2.11
USF1P22415 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
USF1P22415 MIR6134-201ENST00000617606 109 ntBASIC1.85□□□□□ -2.11
USF1P22415 U4atac.1-201ENST00000618345 95 ntBASIC1.85□□□□□ -2.11
USF1P22415 AP003400.5-201ENST00000624827 617 ntBASIC1.85□□□□□ -2.11
USF1P22415 TEX21P-201ENST00000447107 1476 ntBASIC1.85□□□□□ -2.11
USF1P22415 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.85□□□□□ -2.11
USF1P22415 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
USF1P22415 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
USF1P22415 RN7SKP158-201ENST00000410453 326 ntBASIC1.84□□□□□ -2.11
USF1P22415 RPS12P24-201ENST00000412619 387 ntBASIC1.84□□□□□ -2.11
USF1P22415 AL356379.1-201ENST00000414105 126 ntBASIC1.84□□□□□ -2.11
USF1P22415 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
USF1P22415 OR51A5P-201ENST00000415429 942 ntBASIC1.84□□□□□ -2.11
USF1P22415 RPS24P7-201ENST00000416921 246 ntBASIC1.84□□□□□ -2.11
USF1P22415 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.84□□□□□ -2.11
USF1P22415 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.84□□□□□ -2.11
USF1P22415 AC018634.1-201ENST00000437554 401 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.84□□□□□ -2.11
USF1P22415 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 AC090515.1-201ENST00000465295 476 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC068781.1-201ENST00000488231 618 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC090255.1-201ENST00000495779 349 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.84□□□□□ -2.11
USF1P22415 AC119751.4-201ENST00000507498 357 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 RNA5SP200-201ENST00000516360 103 ntBASIC1.84□□□□□ -2.11
USF1P22415 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 AC084851.1-201ENST00000529105 249 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.84□□□□□ -2.11
USF1P22415 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.84□□□□□ -2.11
USF1P22415 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.84□□□□□ -2.11
USF1P22415 AC023050.2-201ENST00000544968 387 ntBASIC1.84□□□□□ -2.11
USF1P22415 AC078814.3-201ENST00000553036 491 ntBASIC1.84□□□□□ -2.11
USF1P22415 AL138976.2-201ENST00000563989 694 ntBASIC1.84□□□□□ -2.11
USF1P22415 MIR4307-201ENST00000582802 84 ntBASIC1.84□□□□□ -2.11
USF1P22415 AL161423.1-201ENST00000613700 262 ntBASIC1.84□□□□□ -2.11
USF1P22415 FRG1KP-201ENST00000623592 341 ntBASIC1.84□□□□□ -2.11
USF1P22415 ZNF72P-201ENST00000425869 1908 ntBASIC1.83□□□□□ -2.12
USF1P22415 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
USF1P22415 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
USF1P22415 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USF1P22415 Z75746.1-201ENST00000440243 2080 ntBASIC1.83□□□□□ -2.12
USF1P22415 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.83□□□□□ -2.12
USF1P22415 RNU6-288P-201ENST00000363690 104 ntBASIC1.83□□□□□ -2.12
USF1P22415 RNU6-1280P-201ENST00000365211 107 ntBASIC1.83□□□□□ -2.12
USF1P22415 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
USF1P22415 Z98749.2-208ENST00000381646 500 ntBASIC1.83□□□□□ -2.12
USF1P22415 MIR301A-201ENST00000385261 86 ntBASIC1.83□□□□□ -2.12
USF1P22415 GSTA9P-201ENST00000406231 611 ntBASIC1.83□□□□□ -2.12
USF1P22415 SNORD23.1-201ENST00000408212 104 ntBASIC1.83□□□□□ -2.12
USF1P22415 MTCO2P8-201ENST00000412213 658 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC097463.2-201ENST00000421074 142 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC093106.2-201ENST00000428212 385 ntBASIC1.83□□□□□ -2.12
USF1P22415 MTND1P32-201ENST00000433043 938 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.83□□□□□ -2.12
USF1P22415 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USF1P22415 AC004854.1-201ENST00000440356 349 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC104058.1-201ENST00000448028 297 ntBASIC1.83□□□□□ -2.12
USF1P22415 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.83□□□□□ -2.12
USF1P22415 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.83□□□□□ -2.12
USF1P22415 RPL36AP48-201ENST00000485521 314 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC018437.1-201ENST00000492214 406 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC116655.1-201ENST00000508324 901 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC116337.1-201ENST00000509680 687 ntBASIC1.83□□□□□ -2.12
USF1P22415 CBX3P7-201ENST00000532876 502 ntBASIC1.83□□□□□ -2.12
USF1P22415 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.83□□□□□ -2.12
USF1P22415 MTND4P33-201ENST00000556706 766 ntBASIC1.83□□□□□ -2.12
USF1P22415 LINC00933-203ENST00000559812 219 ntBASIC1.83□□□□□ -2.12
USF1P22415 AL049838.1-201ENST00000563647 981 ntBASIC1.83□□□□□ -2.12
USF1P22415 MIR3146-201ENST00000580367 79 ntBASIC1.83□□□□□ -2.12
USF1P22415 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.83□□□□□ -2.12
USF1P22415 MTCO2P2-201ENST00000591258 225 ntBASIC1.83□□□□□ -2.12
USF1P22415 BNIP3P40-201ENST00000596017 556 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC068276.1-201ENST00000605793 379 ntBASIC1.83□□□□□ -2.12
USF1P22415 AL139418.1-201ENST00000613613 177 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.83□□□□□ -2.12
USF1P22415 AC098657.3-201ENST00000620434 263 ntBASIC1.83□□□□□ -2.12
USF1P22415 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USF1P22415 Z99571.1-201ENST00000636677 394 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms