Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC002545.1-201ENST00000592511 181 ntBASIC2.92□□□□□ -1.94
MSH3P20585 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.92□□□□□ -1.94
MSH3P20585 BNIP3P30-201ENST00000601184 574 ntBASIC2.92□□□□□ -1.94
MSH3P20585 AC034102.8-201ENST00000615146 484 ntBASIC2.92□□□□□ -1.94
MSH3P20585 U6.114-201ENST00000636407 96 ntBASIC2.92□□□□□ -1.94
MSH3P20585 MTND5P42-201ENST00000637720 498 ntBASIC2.92□□□□□ -1.94
MSH3P20585 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
MSH3P20585 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.92□□□□□ -1.94
MSH3P20585 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
MSH3P20585 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.92□□□□□ -1.94
MSH3P20585 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
MSH3P20585 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
MSH3P20585 RNU6-288P-201ENST00000363690 104 ntBASIC2.91□□□□□ -1.94
MSH3P20585 SNORA9.2-201ENST00000365361 133 ntBASIC2.91□□□□□ -1.94
MSH3P20585 U8.9-201ENST00000365667 134 ntBASIC2.91□□□□□ -1.94
MSH3P20585 MIR128-1-201ENST00000384921 82 ntBASIC2.91□□□□□ -1.94
MSH3P20585 SNORA48.2-201ENST00000390926 124 ntBASIC2.91□□□□□ -1.94
MSH3P20585 MIR887-201ENST00000401258 79 ntBASIC2.91□□□□□ -1.94
MSH3P20585 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
MSH3P20585 RNU6-387P-201ENST00000411331 105 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RPS12P24-201ENST00000412619 387 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RPL7P10-201ENST00000417407 739 ntBASIC2.91□□□□□ -1.94
MSH3P20585 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.91□□□□□ -1.94
MSH3P20585 MTCYBP8-201ENST00000422855 651 ntBASIC2.91□□□□□ -1.94
MSH3P20585 TMEM167AP1-201ENST00000423409 219 ntBASIC2.91□□□□□ -1.94
MSH3P20585 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.91□□□□□ -1.94
MSH3P20585 TAAR7P-201ENST00000436141 242 ntBASIC2.91□□□□□ -1.94
MSH3P20585 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.91□□□□□ -1.94
MSH3P20585 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.91□□□□□ -1.94
MSH3P20585 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.91□□□□□ -1.94
MSH3P20585 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.91□□□□□ -1.94
MSH3P20585 RPS20P22-201ENST00000473700 357 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RPL30P14-201ENST00000482744 348 ntBASIC2.91□□□□□ -1.94
MSH3P20585 AC069439.1-201ENST00000494739 167 ntBASIC2.91□□□□□ -1.94
MSH3P20585 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.91□□□□□ -1.94
MSH3P20585 AC083906.5-201ENST00000503722 328 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RBBP4P6-201ENST00000508098 202 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RNA5SP401-201ENST00000515920 127 ntBASIC2.91□□□□□ -1.94
MSH3P20585 SNORA31.1-201ENST00000515993 133 ntBASIC2.91□□□□□ -1.94
MSH3P20585 SNORA31.5-201ENST00000516190 133 ntBASIC2.91□□□□□ -1.94
MSH3P20585 Y_RNA.689-201ENST00000516589 107 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RNU6-677P-201ENST00000516914 101 ntBASIC2.91□□□□□ -1.94
MSH3P20585 RNA5SP503-201ENST00000517047 117 ntBASIC2.91□□□□□ -1.94
MSH3P20585 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.91□□□□□ -1.94
MSH3P20585 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.91□□□□□ -1.94
MSH3P20585 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.91□□□□□ -1.94
MSH3P20585 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.91□□□□□ -1.94
MSH3P20585 MIR4703-201ENST00000577728 79 ntBASIC2.91□□□□□ -1.94
MSH3P20585 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.91□□□□□ -1.94
MSH3P20585 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
MSH3P20585 AC012409.4-201ENST00000612923 249 ntBASIC2.91□□□□□ -1.94
MSH3P20585 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.91□□□□□ -1.94
MSH3P20585 uc_338.11-201ENST00000619132 160 ntBASIC2.91□□□□□ -1.94
MSH3P20585 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.91□□□□□ -1.94
MSH3P20585 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
MSH3P20585 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
MSH3P20585 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.9□□□□□ -1.94
MSH3P20585 RNU6-451P-201ENST00000362921 107 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-877P-201ENST00000383868 107 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-190P-201ENST00000384154 102 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-851P-201ENST00000384565 107 ntBASIC2.9□□□□□ -1.95
MSH3P20585 SNORA1.3-201ENST00000384676 136 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-903P-201ENST00000391270 109 ntBASIC2.9□□□□□ -1.95
MSH3P20585 SNORA26.7-201ENST00000391288 122 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU2-29P-201ENST00000410423 189 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-1068P-201ENST00000410958 103 ntBASIC2.9□□□□□ -1.95
MSH3P20585 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
MSH3P20585 AC092809.3-201ENST00000415453 231 ntBASIC2.9□□□□□ -1.95
MSH3P20585 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.9□□□□□ -1.95
MSH3P20585 SNRPEP10-201ENST00000420249 274 ntBASIC2.9□□□□□ -1.95
MSH3P20585 HMGB1P27-201ENST00000431429 603 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RPL21P2-201ENST00000440049 481 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.9□□□□□ -1.95
MSH3P20585 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.9□□□□□ -1.95
MSH3P20585 FABP5P13-201ENST00000452144 328 ntBASIC2.9□□□□□ -1.95
MSH3P20585 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.9□□□□□ -1.95
MSH3P20585 AL590639.1-201ENST00000456484 337 ntBASIC2.9□□□□□ -1.95
MSH3P20585 S100A11P2-201ENST00000467589 312 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC117522.3-201ENST00000507974 584 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC104806.1-201ENST00000508720 308 ntBASIC2.9□□□□□ -1.95
MSH3P20585 TTC39CP1-201ENST00000512513 755 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU6-123P-201ENST00000516163 102 ntBASIC2.9□□□□□ -1.95
MSH3P20585 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC130324.3-201ENST00000614165 542 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC010338.1-201ENST00000621823 717 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC024940.5-201ENST00000622889 474 ntBASIC2.9□□□□□ -1.95
MSH3P20585 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
MSH3P20585 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
MSH3P20585 AC004520.1-201ENST00000608362 1413 ntBASIC2.9□□□□□ -1.95
MSH3P20585 AC103710.2-202ENST00000641454 2853 ntBASIC2.9□□□□□ -1.95
MSH3P20585 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.9□□□□□ -1.95
MSH3P20585 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
MSH3P20585 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
MSH3P20585 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.89□□□□□ -1.95
MSH3P20585 RNU6-1167P-201ENST00000363227 94 ntBASIC2.89□□□□□ -1.95
MSH3P20585 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
MSH3P20585 UBE2V1P2-201ENST00000397758 440 ntBASIC2.89□□□□□ -1.95
MSH3P20585 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.89□□□□□ -1.95
MSH3P20585 EEF1A1P41-201ENST00000414667 207 ntBASIC2.89□□□□□ -1.95
MSH3P20585 AL590383.1-201ENST00000428602 75 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms