Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
HMGA1P17096 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
HMGA1P17096 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
HMGA1P17096 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
HMGA1P17096 SNORD114-23-201ENST00000363536 72 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC0.48□□□□□ -2.33
HMGA1P17096 RPL7P29-201ENST00000437151 728 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AL353691.1-201ENST00000451332 387 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.48□□□□□ -2.33
HMGA1P17096 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.48□□□□□ -2.33
HMGA1P17096 AC109927.2-201ENST00000506416 303 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC111000.5-201ENST00000506559 1178 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.48□□□□□ -2.33
HMGA1P17096 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.48□□□□□ -2.33
HMGA1P17096 AP003122.4-201ENST00000530980 758 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.48□□□□□ -2.33
HMGA1P17096 SULT1C2P1-202ENST00000562418 459 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC012435.1-202ENST00000568772 240 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC012669.1-201ENST00000603209 283 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 AC009229.3-201ENST00000608056 282 ntBASIC0.48□□□□□ -2.33
HMGA1P17096 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
HMGA1P17096 Y_RNA.205-201ENST00000364128 113 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 RNU4-41P-201ENST00000364426 143 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 RNU6-733P-201ENST00000410759 104 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 POLR2J4-204ENST00000418424 324 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 PIGFP2-201ENST00000421400 651 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 HSPE1P13-201ENST00000451143 297 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 AC007395.1-201ENST00000451333 677 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 AL583843.1-201ENST00000456070 346 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 RPL30P7-201ENST00000479312 323 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.47□□□□□ -2.33
HMGA1P17096 AC025857.1-201ENST00000525252 377 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGA1P17096 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.47□□□□□ -2.33
HMGA1P17096 ZNF92P3-201ENST00000596594 954 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 AC013468.1-201ENST00000608680 598 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGA1P17096 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.47□□□□□ -2.33
HMGA1P17096 AC004808.1-201ENST00000627671 721 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.47□□□□□ -2.33
HMGA1P17096 RNU6-821P-201ENST00000390995 107 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 U6atac.2-201ENST00000408644 118 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 RNU2-64P-201ENST00000411315 191 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC006461.1-201ENST00000412637 326 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AL449283.1-202ENST00000418249 604 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 MTND2P19-201ENST00000449129 1012 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC006512.1-201ENST00000468816 291 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC138853.1-201ENST00000503549 823 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC114786.4-201ENST00000508771 728 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC114797.1-201ENST00000514003 728 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.46□□□□□ -2.34
HMGA1P17096 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.46□□□□□ -2.34
HMGA1P17096 MIR4661-201ENST00000582720 75 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGA1P17096 AL138963.2-201ENST00000605137 226 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 AL391597.1-201ENST00000618707 694 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
HMGA1P17096 AC010487.4-201ENST00000637027 61 ntBASIC0.46□□□□□ -2.34
HMGA1P17096 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
HMGA1P17096 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGA1P17096 AC013410.2-201ENST00000422627 201 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGA1P17096 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.45□□□□□ -2.34
HMGA1P17096 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGA1P17096 RSU1P2-202ENST00000437884 485 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGA1P17096 snoU13.9-201ENST00000458927 103 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 AL049714.1-201ENST00000466686 347 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGA1P17096 MTCYBP16-201ENST00000509187 1129 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 SCARNA16.2-201ENST00000516520 172 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 RNA5SP404-201ENST00000517118 132 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 AC008562.1-201ENST00000521763 330 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGA1P17096 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.45□□□□□ -2.34
HMGA1P17096 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGA1P17096 AC093510.2-201ENST00000562820 896 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGA1P17096 U1.36-201ENST00000620684 176 ntBASIC0.45□□□□□ -2.34
HMGA1P17096 MTND5P30-201ENST00000452896 1731 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 RNU6-271P-201ENST00000363858 105 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
HMGA1P17096 TAF9BP2-201ENST00000400856 499 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 SSXP10-201ENST00000402595 565 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 MIR1290-201ENST00000408735 78 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 STAT4-203ENST00000409995 709 ntTSL 5 BASIC0.44□□□□□ -2.34
HMGA1P17096 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGA1P17096 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.44□□□□□ -2.34
HMGA1P17096 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGA1P17096 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGA1P17096 AC079140.2-201ENST00000506193 142 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
HMGA1P17096 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGA1P17096 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.44□□□□□ -2.34
HMGA1P17096 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.44□□□□□ -2.34
HMGA1P17096 RAB11AP2-201ENST00000545905 639 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 AC084824.5-201ENST00000612009 413 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 MIR5087-201ENST00000635826 76 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms