Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MRPL50P4-201ENST00000446432 475 ntBASIC2.71□□□□□ -1.98
SIX3O95343 RPS27AP8-201ENST00000452665 445 ntBASIC2.71□□□□□ -1.98
SIX3O95343 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.71□□□□□ -1.98
SIX3O95343 RN7SL297P-201ENST00000483161 293 ntBASIC2.71□□□□□ -1.98
SIX3O95343 RPL9P33-201ENST00000484311 566 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC083906.5-201ENST00000503722 328 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.71□□□□□ -1.98
SIX3O95343 RPPH1-2P-201ENST00000516688 293 ntBASIC2.71□□□□□ -1.98
SIX3O95343 Y_RNA.695-201ENST00000516715 107 ntBASIC2.71□□□□□ -1.98
SIX3O95343 BTF3P12-201ENST00000519620 469 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.71□□□□□ -1.98
SIX3O95343 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.71□□□□□ -1.98
SIX3O95343 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.71□□□□□ -1.98
SIX3O95343 AC090616.3-201ENST00000582184 217 ntBASIC2.71□□□□□ -1.98
SIX3O95343 MIR3199-1-201ENST00000582434 88 ntBASIC2.71□□□□□ -1.98
SIX3O95343 MIR3605-201ENST00000583214 100 ntBASIC2.71□□□□□ -1.98
SIX3O95343 MIR4765-201ENST00000585007 77 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC040904.1-201ENST00000590850 223 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC023043.3-201ENST00000593113 385 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.71□□□□□ -1.98
SIX3O95343 AL391813.1-201ENST00000603098 260 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC024153.1-201ENST00000603103 365 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC126118.1-201ENST00000607744 628 ntBASIC2.71□□□□□ -1.98
SIX3O95343 MIR3974-201ENST00000637126 96 ntBASIC2.71□□□□□ -1.98
SIX3O95343 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.71□□□□□ -1.98
SIX3O95343 AP006437.1-201ENST00000641440 3685 ntBASIC2.71□□□□□ -1.98
SIX3O95343 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.7□□□□□ -1.98
SIX3O95343 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
SIX3O95343 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 SNORA18.3-201ENST00000384122 132 ntBASIC2.7□□□□□ -1.98
SIX3O95343 SNORA70B-201ENST00000384210 135 ntBASIC2.7□□□□□ -1.98
SIX3O95343 SNORA24.1-201ENST00000384401 135 ntBASIC2.7□□□□□ -1.98
SIX3O95343 MIR218-1-201ENST00000384999 110 ntBASIC2.7□□□□□ -1.98
SIX3O95343 MIR1302-8-201ENST00000408342 128 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNA5SP508-201ENST00000411327 119 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AC090960.1-201ENST00000421072 306 ntBASIC2.7□□□□□ -1.98
SIX3O95343 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.7□□□□□ -1.98
SIX3O95343 RPL31P35-201ENST00000431058 377 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AL139132.1-201ENST00000431587 344 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RPS20P5-201ENST00000434808 360 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RPL21P2-201ENST00000440049 481 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 AC009961.3-201ENST00000449832 765 ntBASIC2.7□□□□□ -1.98
SIX3O95343 GAPDHP17-201ENST00000449858 1001 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AC003071.1-201ENST00000451219 789 ntBASIC2.7□□□□□ -1.98
SIX3O95343 GSTA11P-201ENST00000452866 669 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 SNORD42A-201ENST00000459584 64 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AL121769.1-201ENST00000469473 401 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RPL23AP11-201ENST00000475260 469 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RAP1BP2-201ENST00000478270 544 ntBASIC2.7□□□□□ -1.98
SIX3O95343 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.7□□□□□ -1.98
SIX3O95343 RN7SL499P-201ENST00000481141 276 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AC116562.3-201ENST00000506136 177 ntBASIC2.7□□□□□ -1.98
SIX3O95343 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.7□□□□□ -1.98
SIX3O95343 AC010486.3-201ENST00000511602 785 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNU1-41P-201ENST00000516161 162 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNU6-991P-201ENST00000516168 107 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNU1-48P-201ENST00000516400 162 ntBASIC2.7□□□□□ -1.98
SIX3O95343 SCARNA24.1-201ENST00000516465 137 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNU6-410P-201ENST00000517006 107 ntBASIC2.7□□□□□ -1.98
SIX3O95343 RNU6-1220P-201ENST00000517126 108 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AC009902.1-201ENST00000519351 183 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 AC068587.5-201ENST00000528506 175 ntBASIC2.7□□□□□ -1.98
SIX3O95343 OR5BN1P-201ENST00000532955 829 ntBASIC2.7□□□□□ -1.98
SIX3O95343 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.7□□□□□ -1.98
SIX3O95343 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
SIX3O95343 DEFB131E-202ENST00000602581 683 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AC090578.1-201ENST00000604955 591 ntBASIC2.7□□□□□ -1.98
SIX3O95343 AL157786.1-207ENST00000627771 695 ntBASIC2.7□□□□□ -1.98
SIX3O95343 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
SIX3O95343 ELL2P3-201ENST00000457883 1602 ntBASIC2.7□□□□□ -1.98
SIX3O95343 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
SIX3O95343 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SIX3O95343 MIR26A1-201ENST00000362205 77 ntBASIC2.69□□□□□ -1.98
SIX3O95343 RNU6-858P-201ENST00000362436 107 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AL592148.1-201ENST00000413568 445 ntBASIC2.69□□□□□ -1.98
SIX3O95343 EEF1A1P41-201ENST00000414667 207 ntBASIC2.69□□□□□ -1.98
SIX3O95343 BX295541.1-201ENST00000417774 250 ntBASIC2.69□□□□□ -1.98
SIX3O95343 C1DP2-201ENST00000418167 426 ntBASIC2.69□□□□□ -1.98
SIX3O95343 Z98742.2-201ENST00000431564 187 ntBASIC2.69□□□□□ -1.98
SIX3O95343 FABP5P14-201ENST00000437273 393 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AL022238.1-201ENST00000442557 355 ntBASIC2.69□□□□□ -1.98
SIX3O95343 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AC079781.2-201ENST00000446424 169 ntBASIC2.69□□□□□ -1.98
SIX3O95343 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.69□□□□□ -1.98
SIX3O95343 snoU13.23-201ENST00000458863 104 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.69□□□□□ -1.98
SIX3O95343 AC023194.1-201ENST00000493084 308 ntBASIC2.69□□□□□ -1.98
SIX3O95343 EIF4EP3-201ENST00000498782 656 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.69□□□□□ -1.98
SIX3O95343 AC023141.11-201ENST00000508864 202 ntBASIC2.69□□□□□ -1.98
SIX3O95343 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.69□□□□□ -1.98
SIX3O95343 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.69□□□□□ -1.98
SIX3O95343 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms