Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL445189.1-201ENST00000405722 338 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP229-201ENST00000410809 99 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC063979.1-201ENST00000415539 377 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 RPLP0P7-201ENST00000416050 667 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC007919.1-201ENST00000429380 217 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC115115.1-201ENST00000449927 248 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 FABP5P15-201ENST00000453566 214 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 DYNLL1P5-201ENST00000467158 270 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 SNORA19.2-201ENST00000516013 114 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 CYCSP27-201ENST00000527643 293 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 RPS3AP23-202ENST00000574601 686 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 MIR3922-201ENST00000585192 84 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 SRP72P2-201ENST00000344851 1979 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-395P-201ENST00000365662 106 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 MIR218-2-201ENST00000385006 110 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 MIR493-201ENST00000385254 89 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP44-201ENST00000410446 133 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC007390.1-201ENST00000415722 356 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AL353678.1-201ENST00000422735 741 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC018644.1-201ENST00000429934 551 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RPL23AP69-201ENST00000431134 458 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 Z82210.1-201ENST00000440037 231 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 UBE2V1P7-201ENST00000446395 340 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AL133547.1-201ENST00000448546 220 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 PPP1R2P5-201ENST00000457256 603 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RPL7P5-201ENST00000471472 736 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RPL21P13-201ENST00000488305 481 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC093663.1-201ENST00000497190 394 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RNU1-61P-201ENST00000516107 151 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-864P-201ENST00000516256 108 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC026403.1-201ENST00000518938 295 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 MIR4719-201ENST00000585233 84 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 CR392039.5-201ENST00000623201 510 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC012442.3-202ENST00000636742 206 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 TPTEP1-208ENST00000636884 213 ntBASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.87□□□□□ -1.79
LIMCH1Q9UPQ0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC022336.2-201ENST00000568966 2538 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.529-201ENST00000384586 119 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AL122016.1-201ENST00000403365 367 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 NDUFB4P5-201ENST00000415445 361 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 RPL21P90-201ENST00000415692 466 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 NDUFB4P6-201ENST00000436819 366 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 PIGFP3-201ENST00000441918 722 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 KC877373.1-201ENST00000479066 408 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AL049830.2-201ENST00000480072 201 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 MTCO1P29-201ENST00000496868 288 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC103851.1-201ENST00000506833 274 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC008716.1-201ENST00000511084 513 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 SNORA14.1-201ENST00000516113 141 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-1282P-201ENST00000516735 96 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC105029.1-201ENST00000520250 669 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AL157871.3-201ENST00000557231 293 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC026464.5-201ENST00000562497 722 ntBASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.86□□□□□ -1.79
LIMCH1Q9UPQ0 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 161 ms