Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 MIR548AC-201ENST00000585049 88 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC091152.3-201ENST00000604227 325 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 RN7SKP299-201ENST00000606679 301 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC006386.2-201ENST00000624491 75 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC012005.1-201ENST00000624575 75 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 U6.114-201ENST00000636407 96 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS28Q9UK41 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS28Q9UK41 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS28Q9UK41 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS28Q9UK41 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS28Q9UK41 RNU6-282P-201ENST00000365357 103 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 SNORA9.2-201ENST00000365361 133 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 SET-203ENST00000372688 801 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 RNU6-74P-201ENST00000384235 107 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 RNU6-166P-201ENST00000384371 107 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 UBE2V1P2-201ENST00000397758 440 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AL031121.1-201ENST00000406553 254 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 RNA5SP111-201ENST00000411386 101 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 RPL7P10-201ENST00000417407 739 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 COTL1P1-201ENST00000422309 375 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 PTGES3P4-201ENST00000426243 356 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 MTND2P22-201ENST00000444325 1033 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 MTATP6P26-201ENST00000445926 662 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC023194.1-201ENST00000493084 308 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 EIF4EP3-201ENST00000498782 656 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 MTND4P2-201ENST00000507767 1203 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 SNORD27.1-201ENST00000516319 72 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 RNU6-685P-201ENST00000517088 95 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC006362.1-201ENST00000567392 174 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC106782.4-201ENST00000568264 210 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AL391840.1-201ENST00000571144 367 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 AC098614.4-201ENST00000607601 462 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 CKAP2P1-201ENST00000555477 2049 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS28Q9UK41 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.01□□□□□ -1.93
VPS28Q9UK41 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.01□□□□□ -1.93
VPS28Q9UK41 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3□□□□□ -1.93
VPS28Q9UK41 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3□□□□□ -1.93
VPS28Q9UK41 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
VPS28Q9UK41 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3□□□□□ -1.93
VPS28Q9UK41 MIR412-201ENST00000362142 91 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-181P-201ENST00000363225 107 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-461P-201ENST00000364195 107 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-898P-201ENST00000365627 104 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-456P-201ENST00000384493 107 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-19P-201ENST00000384718 107 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 Y_RNA.576-201ENST00000384781 102 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 MIR181B1-201ENST00000385240 110 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 MIR454-201ENST00000390180 115 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3□□□□□ -1.93
VPS28Q9UK41 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3□□□□□ -1.93
VPS28Q9UK41 MTND4P32-201ENST00000437189 1237 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 C1DP4-201ENST00000455429 424 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 AL583843.1-201ENST00000456070 346 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RPS29P26-201ENST00000477483 171 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3□□□□□ -1.93
VPS28Q9UK41 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-581P-201ENST00000516214 105 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNA5SP76-201ENST00000516277 87 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 RNU6-445P-201ENST00000516949 107 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3□□□□□ -1.93
VPS28Q9UK41 OR5AL2P-201ENST00000532185 920 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3□□□□□ -1.93
VPS28Q9UK41 LARP7P3-201ENST00000579888 337 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 NBR2-204ENST00000587322 63 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 AC078899.3-201ENST00000599065 212 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 DEFB131E-202ENST00000602581 683 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 NRBF2P5-201ENST00000603087 788 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 Z84480.1-201ENST00000605131 311 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 AL670379.4-201ENST00000605279 254 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
VPS28Q9UK41 AL035425.3-201ENST00000564206 4996 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3□□□□□ -1.93
VPS28Q9UK41 AC010329.5-201ENST00000623497 2174 ntBASIC3□□□□□ -1.93
VPS28Q9UK41 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3□□□□□ -1.93
VPS28Q9UK41 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS28Q9UK41 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS28Q9UK41 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS28Q9UK41 SNORA62.1-201ENST00000364287 154 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 RNU6-1280P-201ENST00000365211 107 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 SNORD115-7-201ENST00000365306 82 ntBASIC2.99□□□□□ -1.93
VPS28Q9UK41 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 190.4 ms