Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC008413.1-201ENST00000511864 177 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 SNORA31.15-201ENST00000516771 132 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 RNU6-1092P-201ENST00000516955 87 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AC060788.1-201ENST00000521318 469 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AC104763.2-201ENST00000604179 382 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 FRG1KP-201ENST00000623592 341 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 FO624990.1-201ENST00000636373 85 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 MIR7515-201ENST00000637837 67 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.59□□□□□ -2
VPS54Q9P1Q0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.59□□□□□ -2
VPS54Q9P1Q0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS54Q9P1Q0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS54Q9P1Q0 RNU5E-1-201ENST00000362477 120 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 SNORD56.2-201ENST00000363242 71 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 SNORA68.1-201ENST00000364537 132 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 SNORA26.8-201ENST00000391306 124 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 U3.37-201ENST00000408528 213 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 RPS12P24-201ENST00000412619 387 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 NDUFS5P4-201ENST00000412983 318 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 NPM1P11-201ENST00000417106 855 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 HMGB3P12-201ENST00000438745 556 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 RPS15AP7-201ENST00000439294 405 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 BET1P1-201ENST00000482276 359 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 RPL39P36-201ENST00000490784 156 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC118465.1-201ENST00000513820 1271 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC011979.2-201ENST00000527568 352 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AP000889.2-201ENST00000532684 490 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC090616.3-201ENST00000582184 217 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 AC107294.1-201ENST00000609524 467 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 DUSP12P1-201ENST00000612874 516 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.58□□□□□ -2
VPS54Q9P1Q0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS54Q9P1Q0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.58□□□□□ -2
VPS54Q9P1Q0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
VPS54Q9P1Q0 RNU6-946P-201ENST00000383878 107 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 RNU6-750P-201ENST00000390946 107 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC009961.3-201ENST00000449832 765 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 RPL37P25-201ENST00000507308 276 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 RPL23AP94-201ENST00000512518 302 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 SCARNA17.1-201ENST00000516211 143 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 Y_RNA.672-201ENST00000516289 104 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 SCARNA17.2-201ENST00000516334 143 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 RNU2-46P-201ENST00000517038 113 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.57□□□□□ -2
VPS54Q9P1Q0 NACAP3-201ENST00000552100 481 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 BNIP3P9-201ENST00000603714 553 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 AL365204.3-201ENST00000612448 685 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC130324.3-201ENST00000614165 542 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 SCARNA17.4-201ENST00000614296 143 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 AC025048.6-202ENST00000627667 438 ntBASIC2.57□□□□□ -2
VPS54Q9P1Q0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS54Q9P1Q0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC110491.1-201ENST00000562191 2010 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 RNU6-960P-201ENST00000364056 120 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 RNU6-39P-201ENST00000384344 107 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC092809.3-201ENST00000415453 231 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 CR769767.1-201ENST00000436337 346 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 PGBD4P3-201ENST00000440731 581 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC093899.1-201ENST00000457984 376 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC087241.2-201ENST00000535801 324 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC007834.2-201ENST00000536310 343 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 OSBPL9P5-201ENST00000542581 171 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC012414.6-201ENST00000568241 401 ntBASIC2.56□□□□□ -2
VPS54Q9P1Q0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.56□□□□□ -2
VPS54Q9P1Q0 SNORD53-201ENST00000579969 78 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms