Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 RNU6-1282P-201ENST00000516735 96 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 MIR3690-201ENST00000580266 75 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 MIR3939-201ENST00000582614 106 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 AC053481.4-201ENST00000583164 216 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 AC016925.2-201ENST00000605108 242 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 AC019193.3-201ENST00000609144 554 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 MAPK10-373ENST00000641983 6772 ntBASIC3.53□□□□□ -1.84
VSX1Q9NZR4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VSX1Q9NZR4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
VSX1Q9NZR4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RNU6-600P-201ENST00000362524 99 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RNU6-490P-201ENST00000362985 107 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RNU6-1303P-201ENST00000364841 107 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AL022722.2-201ENST00000402519 180 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 HSPE1P26-201ENST00000405341 275 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 Y_RNA.594-201ENST00000410373 140 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 USMG5P1-201ENST00000425964 177 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 DAP3P1-201ENST00000441522 278 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 NOTCH2P1-201ENST00000443481 624 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RANP8-201ENST00000444720 713 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 NUTF2P3-201ENST00000448540 384 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AL500522.2-201ENST00000448562 343 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 MRPS31P2-201ENST00000451581 518 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 MTCO3P10-201ENST00000455912 772 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RNU6-1037P-201ENST00000459571 107 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 HMGN1P10-201ENST00000474557 553 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RPL30P5-201ENST00000494923 336 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 RNU6-1231P-201ENST00000517185 103 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC023575.1-201ENST00000580510 358 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC007938.3-201ENST00000604965 623 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC083809.1-201ENST00000615051 472 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AC092628.2-201ENST00000622492 339 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 AL049641.1-201ENST00000441055 1948 ntBASIC3.52□□□□□ -1.85
VSX1Q9NZR4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.52□□□□□ -1.85
VSX1Q9NZR4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 Y_RNA.252-201ENST00000364556 101 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 SNORA63C-201ENST00000364578 129 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 SNORA41-201ENST00000384675 132 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 MIR34A-201ENST00000385130 110 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AL590632.1-201ENST00000424289 371 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC092047.1-201ENST00000424997 240 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC097713.2-201ENST00000430199 356 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 MYL8P-204ENST00000431574 518 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC236972.1-201ENST00000433225 199 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AL035666.1-201ENST00000446195 348 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 PCMTD1P1-201ENST00000455560 355 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC010618.1-201ENST00000469924 477 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC109479.2-201ENST00000517842 174 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC093227.2-201ENST00000589357 285 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AP000942.4-201ENST00000604811 241 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC116312.1-201ENST00000606841 314 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC009229.3-201ENST00000608056 282 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 MIR486-1-201ENST00000612171 68 ntBASIC3.51□□□□□ -1.85
VSX1Q9NZR4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.51□□□□□ -1.85
VSX1Q9NZR4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VSX1Q9NZR4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
VSX1Q9NZR4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VSX1Q9NZR4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VSX1Q9NZR4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VSX1Q9NZR4 FAM35BP-202ENST00000497389 3337 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms