Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC002044.1-201ENST00000606707 158 ntBASIC3.22□□□□□ -1.89
NPAS1Q99742 AC009248.2-201ENST00000619826 254 ntBASIC3.22□□□□□ -1.89
NPAS1Q99742 AL136221.1-201ENST00000621449 509 ntBASIC3.22□□□□□ -1.89
NPAS1Q99742 AP003122.6-201ENST00000623831 495 ntBASIC3.22□□□□□ -1.89
NPAS1Q99742 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPAS1Q99742 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPAS1Q99742 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.22□□□□□ -1.89
NPAS1Q99742 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
NPAS1Q99742 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.21□□□□□ -1.89
NPAS1Q99742 AL513302.2-201ENST00000562313 1842 ntBASIC3.21□□□□□ -1.89
NPAS1Q99742 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
NPAS1Q99742 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NPAS1Q99742 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NPAS1Q99742 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
NPAS1Q99742 RNU6-270P-201ENST00000364131 105 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 MIR34A-201ENST00000385130 110 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 MIR888-201ENST00000401186 77 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 RPL5P18-201ENST00000406671 891 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 RN7SKP27-201ENST00000410684 333 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 Y_RNA.623-201ENST00000411128 95 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.21□□□□□ -1.9
NPAS1Q99742 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.21□□□□□ -1.9
NPAS1Q99742 AC098614.2-201ENST00000426040 255 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 HMGN2P31-201ENST00000432430 273 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 HMGN2P20-201ENST00000437531 273 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 MTND4LP16-201ENST00000440828 295 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC128713.1-201ENST00000471495 306 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC025518.1-201ENST00000479856 347 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 RPS4XP22-201ENST00000480755 780 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.21□□□□□ -1.9
NPAS1Q99742 AC110768.1-201ENST00000509222 400 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 RNU4-49P-201ENST00000516080 140 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC009902.1-201ENST00000519351 183 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 RNU6-323P-201ENST00000521915 107 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC107953.1-201ENST00000522216 297 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.21□□□□□ -1.9
NPAS1Q99742 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.21□□□□□ -1.9
NPAS1Q99742 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.21□□□□□ -1.9
NPAS1Q99742 H3F3AP1-201ENST00000559984 334 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AMZ2P1-203ENST00000565833 850 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.21□□□□□ -1.9
NPAS1Q99742 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.21□□□□□ -1.9
NPAS1Q99742 UBE2V2P2-201ENST00000587677 504 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.21□□□□□ -1.9
NPAS1Q99742 AL161629.2-201ENST00000615347 275 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC103705.1-201ENST00000619013 241 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 AC092794.2-201ENST00000620933 563 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.21□□□□□ -1.9
NPAS1Q99742 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.21□□□□□ -1.9
NPAS1Q99742 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.21□□□□□ -1.9
NPAS1Q99742 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.21□□□□□ -1.9
NPAS1Q99742 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NPAS1Q99742 AL353746.1-201ENST00000566293 6881 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.2□□□□□ -1.9
NPAS1Q99742 SNORA71.3-201ENST00000362582 128 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 Y_RNA.70-201ENST00000362886 110 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 SNORD3E-201ENST00000362899 217 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RNU6-522P-201ENST00000364497 107 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RNU1-73P-201ENST00000383971 164 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RNU6-1013P-201ENST00000384180 107 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 MIR490-201ENST00000384865 128 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 MIR10A-201ENST00000385043 110 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 SNORA48.7-201ENST00000391302 135 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RNA5SP293-201ENST00000410527 113 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC093578.1-201ENST00000415219 368 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 NDUFB4P5-201ENST00000415445 361 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RPLP0P7-201ENST00000416050 667 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.2□□□□□ -1.9
NPAS1Q99742 BRK1P2-201ENST00000442875 223 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 PPP1R2P5-201ENST00000457256 603 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AL031183.1-201ENST00000457667 207 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC092798.1-201ENST00000458542 409 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC034236.1-201ENST00000469891 373 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 RPL21P13-201ENST00000488305 481 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 RNU6-711P-201ENST00000517255 106 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC007458.1-201ENST00000542812 373 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.2□□□□□ -1.9
NPAS1Q99742 MIR4444-1-201ENST00000581696 74 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 MIR4444-2-201ENST00000584390 74 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.2□□□□□ -1.9
NPAS1Q99742 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS1Q99742 CTHRC1P1-201ENST00000605383 469 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 Y_RNA.804-201ENST00000615262 101 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.2□□□□□ -1.9
NPAS1Q99742 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC034229.5-201ENST00000624258 185 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.2□□□□□ -1.9
NPAS1Q99742 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms