Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR8087-201ENST00000612745 78 ntBASIC0.58□□□□□ -2.32
USF3Q68DE3 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.58□□□□□ -2.32
USF3Q68DE3 RNU6-670P-201ENST00000364312 104 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 SNORA8-201ENST00000384574 139 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 OR9R1P-201ENST00000412200 877 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AC012497.1-201ENST00000429392 575 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AL354941.1-201ENST00000438600 464 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AC079448.1-201ENST00000449377 373 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AL049714.1-201ENST00000466686 347 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 VPS26AP1-201ENST00000483197 979 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.57□□□□□ -2.32
USF3Q68DE3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.57□□□□□ -2.32
USF3Q68DE3 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.57□□□□□ -2.32
USF3Q68DE3 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.57□□□□□ -2.32
USF3Q68DE3 BNIP3P25-201ENST00000596023 559 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC135803.1-201ENST00000608748 565 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AP003399.1-201ENST00000637534 361 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
USF3Q68DE3 NACAP2-201ENST00000318548 624 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 RNU6-1155P-201ENST00000363554 107 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.57□□□□□ -2.32
USF3Q68DE3 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
USF3Q68DE3 DSTNP4-201ENST00000399472 474 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 RNA5SP127-201ENST00000411051 133 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 UBE2FP1-201ENST00000416536 447 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC096920.1-201ENST00000423991 241 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC093106.2-201ENST00000428212 385 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 SNRPEP7-201ENST00000438350 220 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.57□□□□□ -2.32
USF3Q68DE3 C1DP3-201ENST00000455013 423 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC147055.4-201ENST00000504399 745 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.57□□□□□ -2.32
USF3Q68DE3 AC133485.1-201ENST00000567176 124 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC138907.6-201ENST00000568401 126 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC007151.1-201ENST00000572774 483 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 MIR4713-201ENST00000582691 75 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 PRR13P7-201ENST00000605538 430 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.57□□□□□ -2.32
USF3Q68DE3 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC0.57□□□□□ -2.32
USF3Q68DE3 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.57□□□□□ -2.32
USF3Q68DE3 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
USF3Q68DE3 MTND5P30-201ENST00000452896 1731 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
USF3Q68DE3 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 Y_RNA.433-201ENST00000384089 102 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 MIR508-201ENST00000384857 115 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 MIR325-201ENST00000385260 98 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 RN7SKP200-201ENST00000410564 320 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 RN7SKP61-201ENST00000410642 295 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AP003497.1-201ENST00000528472 562 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AC074051.3-201ENST00000570238 358 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.56□□□□□ -2.32
USF3Q68DE3 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
USF3Q68DE3 RNA5SP276-201ENST00000362580 94 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 SSXP10-201ENST00000402595 565 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.56□□□□□ -2.32
USF3Q68DE3 HSPE1P21-201ENST00000438283 308 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 Z82210.1-201ENST00000440037 231 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AL590365.1-201ENST00000450788 243 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.56□□□□□ -2.32
USF3Q68DE3 SNORA44.1-201ENST00000517031 108 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 CYCSP23-201ENST00000519781 313 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AP003072.2-201ENST00000527756 676 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 DEFB108D-201ENST00000527787 222 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.56□□□□□ -2.32
USF3Q68DE3 AP001485.1-201ENST00000604799 199 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AC018638.7-201ENST00000605836 1114 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 U4atac.1-201ENST00000618345 95 ntBASIC0.56□□□□□ -2.32
USF3Q68DE3 AL049641.1-201ENST00000441055 1948 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 RNU6-942P-201ENST00000363002 107 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 SNORD82-201ENST00000365530 70 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 USP9YP33-201ENST00000412220 421 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.55□□□□□ -2.32
USF3Q68DE3 BEND7P1-201ENST00000422058 457 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 RPP40P1-201ENST00000426762 456 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 ZNF965P-201ENST00000432501 817 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 USP9YP35-201ENST00000435696 412 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 AC092628.1-201ENST00000436250 252 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 RPS15AP5-201ENST00000436276 388 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.55□□□□□ -2.32
USF3Q68DE3 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.55□□□□□ -2.32
USF3Q68DE3 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
USF3Q68DE3 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 MIR3126-201ENST00000577443 74 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 AC117490.2-201ENST00000610042 594 ntBASIC0.55□□□□□ -2.32
USF3Q68DE3 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
USF3Q68DE3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.55□□□□□ -2.32
USF3Q68DE3 AC243829.3-201ENST00000622177 108 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms