Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 FGF7P5-201ENST00000441829 291 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 VN1R10P-201ENST00000447106 875 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 RPL7P55-201ENST00000450522 746 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AC008498.1-201ENST00000613012 531 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AL596245.1-201ENST00000618994 362 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AC109454.4-201ENST00000623411 649 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AC110491.1-201ENST00000562191 2010 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RNA5SP125-201ENST00000364843 120 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-359P-201ENST00000365466 108 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 CIR1P3-201ENST00000405137 479 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC027644.1-201ENST00000419595 298 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RPS3AP44-201ENST00000425466 790 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL121601.2-201ENST00000438019 707 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC091860.1-201ENST00000505723 432 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC093677.1-201ENST00000514414 678 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AP005902.1-201ENST00000521358 186 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC118273.2-201ENST00000532092 465 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 NACAP3-201ENST00000552100 481 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC024257.5-201ENST00000612739 531 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-140P-201ENST00000384566 108 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 MIR513A1-201ENST00000385138 129 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-750P-201ENST00000390946 107 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 UBE2V1P15-201ENST00000407776 448 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RN7SKP158-201ENST00000410453 326 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 RPS20P15-201ENST00000412792 311 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 TPMTP2-201ENST00000414372 726 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 MTCYBP11-201ENST00000447254 1109 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 OFD1P3Y-201ENST00000453312 783 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 MTATP6P7-201ENST00000453315 681 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC004223.1-201ENST00000479840 271 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 MTCYBP35-201ENST00000503630 1137 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AGGF1P5-201ENST00000567900 919 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC024619.4-201ENST00000580924 316 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AL109918.3-201ENST00000603072 338 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC009268.2-201ENST00000621925 457 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC097460.3-201ENST00000623099 442 ntBASIC1.46□□□□□ -2.18
CCDC88AQ3V6T2 AC007785.2-201ENST00000598627 1916 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 MIR373-201ENST00000362273 69 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-223P-201ENST00000362830 107 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-839P-201ENST00000363347 108 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-353P-201ENST00000364266 108 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 NDUFS5P4-201ENST00000412983 318 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 HMGB1P49-201ENST00000418882 569 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AL451054.2-201ENST00000420896 202 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 MTND2P30-201ENST00000456663 382 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC021382.1-201ENST00000483523 359 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 LARP1BP2-201ENST00000486594 519 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC069304.2-201ENST00000605154 435 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC243773.3-201ENST00000613270 256 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC011939.3-201ENST00000613686 466 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AL118556.2-201ENST00000614375 824 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC079416.3-201ENST00000624479 549 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 AC087821.2-201ENST00000637086 450 ntBASIC1.45□□□□□ -2.18
CCDC88AQ3V6T2 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 MTND5P30-201ENST00000452896 1731 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 MIR16-2-201ENST00000362117 81 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 Y_RNA.30-201ENST00000362572 97 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-270P-201ENST00000364131 105 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-657P-201ENST00000383904 107 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-1083P-201ENST00000384022 107 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 SNORD56-201ENST00000413522 71 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AL109913.1-201ENST00000421173 514 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 PPP1R11P2-201ENST00000423543 382 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 MTND1P18-201ENST00000448191 573 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 MRPS17P3-201ENST00000465453 385 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AC123912.5-201ENST00000605470 343 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms