Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 TMEM167AP1-201ENST00000423409 219 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 AL445305.1-201ENST00000432577 575 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX4Q06945 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 AL359073.1-201ENST00000448036 403 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 SERF1AP1-201ENST00000514575 187 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 SNORA25.14-201ENST00000516481 132 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX4Q06945 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX4Q06945 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.54□□□□□ -1.68
SOX4Q06945 AL353748.2-201ENST00000622148 471 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SOX4Q06945 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX4Q06945 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 AC009812.4-201ENST00000569134 1805 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX4Q06945 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX4Q06945 NOL8P1-201ENST00000508336 3529 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX4Q06945 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX4Q06945 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
SOX4Q06945 U3.6-201ENST00000363622 211 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 SNORA57.1-201ENST00000391227 145 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 RNU6-1025P-201ENST00000410629 104 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX4Q06945 CKS1BP5-201ENST00000434172 273 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX4Q06945 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.53□□□□□ -1.68
SOX4Q06945 HIGD1AP2-201ENST00000446367 280 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 ABCF2P2-201ENST00000450549 296 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 IFNWP4-201ENST00000453148 294 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 AC079354.2-201ENST00000453523 154 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 RNU7-120P-201ENST00000459334 63 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 RNU7-87P-201ENST00000459343 62 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 RPL7P49-201ENST00000471402 708 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 RPS29P19-201ENST00000479709 171 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX4Q06945 AC107393.1-201ENST00000512403 346 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SOX4Q06945 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.53□□□□□ -1.68
SOX4Q06945 AC103996.1-201ENST00000555468 102 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 VN1R85P-201ENST00000601587 426 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.53□□□□□ -1.68
SOX4Q06945 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.53□□□□□ -1.68
SOX4Q06945 MIR7151-201ENST00000617477 60 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SOX4Q06945 AC006971.1-201ENST00000407916 4486 ntBASIC4.53□□□□□ -1.68
SOX4Q06945 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX4Q06945 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SOX4Q06945 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SOX4Q06945 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SOX4Q06945 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SOX4Q06945 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
SOX4Q06945 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SOX4Q06945 AL022322.2-201ENST00000624072 20397 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SOX4Q06945 MIR412-201ENST00000362142 91 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 RNU6-1167P-201ENST00000363227 94 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 RNA5SP283-201ENST00000365604 119 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.405-201ENST00000383979 100 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.451-201ENST00000384200 100 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 RNY3P4-201ENST00000384428 101 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 SNORA37-201ENST00000384504 129 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.524-201ENST00000384564 100 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.561-201ENST00000384694 100 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.581-201ENST00000391017 97 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 SNORA12.2-201ENST00000391040 156 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 SNORA11-201ENST00000408789 128 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 AL158156.1-201ENST00000422509 473 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.52□□□□□ -1.69
SOX4Q06945 AL591043.1-201ENST00000432461 424 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 BX679664.1-201ENST00000434429 253 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SOX4Q06945 RNA5SP246-201ENST00000458909 119 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 RPL23AP65-201ENST00000475608 468 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 RPL23AP45-201ENST00000476406 468 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 HSPE1P6-201ENST00000479457 291 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.52□□□□□ -1.69
SOX4Q06945 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.52□□□□□ -1.69
SOX4Q06945 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.52□□□□□ -1.69
SOX4Q06945 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.52□□□□□ -1.69
SOX4Q06945 AP002392.1-201ENST00000537692 208 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.52□□□□□ -1.69
SOX4Q06945 AP002770.2-201ENST00000543613 532 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 AC022655.2-201ENST00000577280 318 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 Y_RNA.772-201ENST00000606692 102 ntBASIC4.52□□□□□ -1.69
SOX4Q06945 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.52□□□□□ -1.69
SOX4Q06945 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SOX4Q06945 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SOX4Q06945 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SOX4Q06945 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms