Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC007182.2-201ENST00000489251 402 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 FGF7P4-201ENST00000509595 295 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A4P53420 RNU6-327P-201ENST00000516270 127 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.3□□□□□ -2.04
COL4A4P53420 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A4P53420 AP000790.1-201ENST00000528891 737 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AL162413.1-201ENST00000603198 110 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 ZNF37BP-203ENST00000452306 1352 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL4A4P53420 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6-462P-201ENST00000362659 105 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6-433P-201ENST00000363216 104 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 Y_RNA.279-201ENST00000364763 95 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6-98P-201ENST00000384173 107 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 Y_RNA.460-201ENST00000384255 102 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 MT-TP-201ENST00000387461 68 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6-780P-201ENST00000391030 104 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 MTCO3P21-201ENST00000430791 643 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.29□□□□□ -2.04
COL4A4P53420 AC002486.1-201ENST00000435098 391 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RPS25P9-201ENST00000435591 252 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RPL21P2-201ENST00000440049 481 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.29□□□□□ -2.04
COL4A4P53420 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.29□□□□□ -2.04
COL4A4P53420 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 TRBV26-201ENST00000456572 344 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 AC114786.4-201ENST00000508771 728 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AF131216.2-201ENST00000512316 564 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 MTCO1P30-201ENST00000515244 580 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNU6-1004P-201ENST00000516584 111 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 SNORA18.6-201ENST00000516792 115 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 RNA5SP490-201ENST00000517141 136 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 AP003122.4-201ENST00000530980 758 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 PSMA3P-201ENST00000555485 635 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC025678.1-201ENST00000567861 338 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 FAM106CP-201ENST00000582212 507 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A4P53420 AC103710.4-201ENST00000609301 899 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AL132765.2-201ENST00000610812 351 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AL365204.3-201ENST00000612448 685 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC008250.2-201ENST00000615261 205 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AL158801.5-201ENST00000623123 465 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC244517.12-201ENST00000623581 663 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.29□□□□□ -2.04
COL4A4P53420 FARSBP1-201ENST00000435808 1778 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.29□□□□□ -2.04
COL4A4P53420 OR4G11P-202ENST00000642116 1414 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 AC026241.1-201ENST00000517873 2142 ntBASIC2.29□□□□□ -2.04
COL4A4P53420 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A4P53420 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A4P53420 RNU6-492P-201ENST00000363035 104 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 RNU6-251P-201ENST00000363235 104 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 Y_RNA.112-201ENST00000363250 102 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 SNORA51.2-201ENST00000364595 132 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 RNU1-51P-201ENST00000365345 176 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 SNORA67.3-201ENST00000384366 140 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A4P53420 AC007390.1-201ENST00000415722 356 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A4P53420 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 AL513185.2-201ENST00000425543 193 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 RPL23AP20-201ENST00000447965 421 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL118520.1-201ENST00000450770 291 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 CALM1P2-201ENST00000452941 448 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.28□□□□□ -2.04
COL4A4P53420 AC087190.1-201ENST00000484462 480 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.28□□□□□ -2.04
COL4A4P53420 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.28□□□□□ -2.04
COL4A4P53420 MTCYBP43-201ENST00000513621 740 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 Y_RNA.675-201ENST00000516389 149 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 HSPE1P18-201ENST00000517602 280 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.28□□□□□ -2.04
COL4A4P53420 AC087241.2-201ENST00000535801 324 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC2.28□□□□□ -2.04
COL4A4P53420 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.28□□□□□ -2.04
COL4A4P53420 AL512360.1-201ENST00000555346 234 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL359212.1-201ENST00000556608 614 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 MAGOH2P-202ENST00000584384 429 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 VN1R80P-201ENST00000597126 338 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AC012507.3-201ENST00000603556 477 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AC112187.2-201ENST00000604345 283 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AC113139.1-201ENST00000605049 239 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AC009233.1-201ENST00000616477 371 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 AL445264.1-201ENST00000621719 171 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms