Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPL21P1-201ENST00000399532 476 ntBASIC3.8□□□□□ -1.8
MSX2P35548 MIR1252-201ENST00000408861 65 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RNU2-3P-201ENST00000410144 191 ntBASIC3.8□□□□□ -1.8
MSX2P35548 UBE2D3P2-201ENST00000424409 445 ntBASIC3.8□□□□□ -1.8
MSX2P35548 MTCO1P39-201ENST00000426148 480 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AC079780.1-201ENST00000428259 207 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RPS15AP10-201ENST00000432472 382 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RPL26P6-201ENST00000440913 438 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AL121871.1-201ENST00000443413 436 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.8□□□□□ -1.8
MSX2P35548 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.8□□□□□ -1.8
MSX2P35548 AL583843.1-201ENST00000456070 346 ntBASIC3.8□□□□□ -1.8
MSX2P35548 snoU13.1-201ENST00000459157 104 ntBASIC3.8□□□□□ -1.8
MSX2P35548 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.8□□□□□ -1.8
MSX2P35548 AC110792.1-201ENST00000491826 472 ntBASIC3.8□□□□□ -1.8
MSX2P35548 RN7SL691P-201ENST00000494487 301 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AC022447.4-201ENST00000504053 364 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.8□□□□□ -1.8
MSX2P35548 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.8□□□□□ -1.8
MSX2P35548 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSX2P35548 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.8□□□□□ -1.8
MSX2P35548 HSBP1P1-201ENST00000555205 166 ntBASIC3.8□□□□□ -1.8
MSX2P35548 Z98751.3-201ENST00000604447 521 ntBASIC3.8□□□□□ -1.8
MSX2P35548 AL160281.1-201ENST00000605307 311 ntBASIC3.8□□□□□ -1.8
MSX2P35548 MIR8062-201ENST00000621515 85 ntBASIC3.8□□□□□ -1.8
MSX2P35548 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX2P35548 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
MSX2P35548 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX2P35548 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSX2P35548 AC005183.1-201ENST00000603687 1979 ntBASIC3.8□□□□□ -1.8
MSX2P35548 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
MSX2P35548 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.79□□□□□ -1.8
MSX2P35548 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
MSX2P35548 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 Y_RNA.210-201ENST00000364161 110 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AL030996.1-201ENST00000411430 235 ntBASIC3.79□□□□□ -1.8
MSX2P35548 MTATP6P4-201ENST00000427725 675 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RPL23AP46-201ENST00000438548 490 ntBASIC3.79□□□□□ -1.8
MSX2P35548 OSTCP8-201ENST00000445117 448 ntBASIC3.79□□□□□ -1.8
MSX2P35548 PCMTD1P1-201ENST00000455560 355 ntBASIC3.79□□□□□ -1.8
MSX2P35548 snoU13.4-201ENST00000458916 104 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RN7SL98P-201ENST00000462271 300 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC008571.1-201ENST00000467232 300 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC011005.2-201ENST00000487324 359 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RPL17P19-201ENST00000489069 552 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC018437.1-201ENST00000492214 406 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC114801.2-201ENST00000503825 781 ntBASIC3.79□□□□□ -1.8
MSX2P35548 SUMO2P6-201ENST00000505273 288 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.79□□□□□ -1.8
MSX2P35548 RNU6-408P-201ENST00000515910 100 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RNY3P15-201ENST00000516297 97 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.79□□□□□ -1.8
MSX2P35548 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.79□□□□□ -1.8
MSX2P35548 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.79□□□□□ -1.8
MSX2P35548 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.79□□□□□ -1.8
MSX2P35548 MIR4284-201ENST00000578924 81 ntBASIC3.79□□□□□ -1.8
MSX2P35548 MIR548AC-201ENST00000585049 88 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 FAM27D1-201ENST00000612308 341 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AC083809.1-201ENST00000615051 472 ntBASIC3.79□□□□□ -1.8
MSX2P35548 AL360181.4-201ENST00000621752 134 ntBASIC3.79□□□□□ -1.8
MSX2P35548 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.79□□□□□ -1.8
MSX2P35548 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
MSX2P35548 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 AC116096.1-201ENST00000566804 2314 ntBASIC3.79□□□□□ -1.8
MSX2P35548 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
MSX2P35548 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX2P35548 AC008669.1-201ENST00000565823 2178 ntBASIC3.79□□□□□ -1.8
MSX2P35548 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX2P35548 MTND5P7-201ENST00000413558 1798 ntBASIC3.79□□□□□ -1.8
MSX2P35548 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
MSX2P35548 AC006971.1-201ENST00000407916 4486 ntBASIC3.78□□□□□ -1.8
MSX2P35548 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.78□□□□□ -1.8
MSX2P35548 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
MSX2P35548 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
MSX2P35548 MIR423-201ENST00000362201 94 ntBASIC3.78□□□□□ -1.8
MSX2P35548 Y_RNA.152-201ENST00000363578 100 ntBASIC3.78□□□□□ -1.8
MSX2P35548 Y_RNA.314-201ENST00000365114 102 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX2P35548 Y_RNA.447-201ENST00000384184 113 ntBASIC3.78□□□□□ -1.8
MSX2P35548 Y_RNA.577-201ENST00000384794 101 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL445529.1-201ENST00000398713 389 ntBASIC3.78□□□□□ -1.8
MSX2P35548 HSPE1P26-201ENST00000405341 275 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL138885.1-201ENST00000405921 675 ntBASIC3.78□□□□□ -1.8
MSX2P35548 RNU2-37P-201ENST00000410695 177 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC063979.1-201ENST00000415539 377 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AC108032.1-201ENST00000416706 207 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL353621.1-201ENST00000418219 243 ntBASIC3.78□□□□□ -1.8
MSX2P35548 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.78□□□□□ -1.8
MSX2P35548 HMGB1P27-201ENST00000431429 603 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms