Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.87□□□□□ -1.79
SMARCA1P28370 AC022140.2-201ENST00000623500 188 ntBASIC3.87□□□□□ -1.79
SMARCA1P28370 AC112487.2-201ENST00000637950 304 ntBASIC3.87□□□□□ -1.79
SMARCA1P28370 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SMARCA1P28370 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.87□□□□□ -1.79
SMARCA1P28370 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SMARCA1P28370 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SMARCA1P28370 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SMARCA1P28370 MAPK10-362ENST00000641864 4484 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 Y_RNA.100-201ENST00000363141 102 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RNU6-1167P-201ENST00000363227 94 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RNU6-694P-201ENST00000364071 147 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 Y_RNA.356-201ENST00000365475 113 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RNU6-510P-201ENST00000391239 108 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 MTND3P8-201ENST00000412909 339 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.86□□□□□ -1.79
SMARCA1P28370 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.86□□□□□ -1.79
SMARCA1P28370 NDUFB4P6-201ENST00000436819 366 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RPS24P13-201ENST00000442520 397 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RNU6-329P-201ENST00000459618 107 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.86□□□□□ -1.79
SMARCA1P28370 Y_RNA.654-201ENST00000497848 106 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.86□□□□□ -1.79
SMARCA1P28370 MTND3P22-201ENST00000510932 243 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC074250.1-201ENST00000511117 192 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RN7SKP256-201ENST00000517201 314 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.86□□□□□ -1.79
SMARCA1P28370 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.86□□□□□ -1.79
SMARCA1P28370 AC022690.1-201ENST00000526681 550 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC087241.2-201ENST00000535801 324 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.86□□□□□ -1.79
SMARCA1P28370 MIR4474-201ENST00000579189 78 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 MIR4742-201ENST00000581069 85 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 MIR4276-201ENST00000584832 70 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC098826.3-201ENST00000603823 466 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 RNVU1-4-201ENST00000612985 164 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC093913.1-201ENST00000614178 329 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC009233.1-201ENST00000616477 371 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.86□□□□□ -1.79
SMARCA1P28370 AL359697.1-201ENST00000624879 587 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 SNORA50A-202ENST00000629536 136 ntBASIC3.86□□□□□ -1.79
SMARCA1P28370 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.86□□□□□ -1.79
SMARCA1P28370 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.86□□□□□ -1.79
SMARCA1P28370 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SMARCA1P28370 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SMARCA1P28370 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SMARCA1P28370 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SMARCA1P28370 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.85□□□□□ -1.79
SMARCA1P28370 RNA5SP197-201ENST00000363357 119 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 RNU6-82P-201ENST00000363970 107 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 SNORA4.3-201ENST00000365564 137 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 RNU6-1197P-201ENST00000391183 107 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AL122016.1-201ENST00000403365 367 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 RN7SKP32-201ENST00000410167 303 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 POLHP1-201ENST00000411806 470 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AC080125.1-201ENST00000414888 684 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 BX682237.1-201ENST00000415016 335 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 ARL5AP1-201ENST00000418991 388 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 TMEM167AP1-201ENST00000423409 219 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AC005326.1-201ENST00000429197 123 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AL592045.1-201ENST00000429867 352 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AL591704.1-201ENST00000432574 275 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.85□□□□□ -1.79
SMARCA1P28370 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.85□□□□□ -1.79
SMARCA1P28370 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.85□□□□□ -1.79
SMARCA1P28370 RNA5SP310-201ENST00000459084 116 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 RNU7-66P-201ENST00000459469 62 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 RN7SL601P-201ENST00000471221 293 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 SUMO2P6-201ENST00000505273 288 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.85□□□□□ -1.79
SMARCA1P28370 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.85□□□□□ -1.79
SMARCA1P28370 MIR2276-201ENST00000516886 89 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.85□□□□□ -1.79
SMARCA1P28370 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.85□□□□□ -1.79
SMARCA1P28370 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.85□□□□□ -1.79
SMARCA1P28370 AL161798.1-201ENST00000604630 131 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 AC007179.3-201ENST00000604976 235 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 Z82243.1-201ENST00000609432 473 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SMARCA1P28370 MTND4P29-201ENST00000503122 1372 ntBASIC3.85□□□□□ -1.79
SMARCA1P28370 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.85□□□□□ -1.79
SMARCA1P28370 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
SMARCA1P28370 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SMARCA1P28370 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SMARCA1P28370 AC110774.1-201ENST00000623567 2018 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.84□□□□□ -1.79
SMARCA1P28370 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SMARCA1P28370 MIR30E-201ENST00000362104 92 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SMARCA1P28370 RNU6-393P-201ENST00000384475 107 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 FAT1P1-201ENST00000406588 507 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 SNORA11.1-201ENST00000408133 129 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 RNA5SP120-201ENST00000410900 112 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 RNU6-55P-201ENST00000411092 107 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 RNU6-954P-201ENST00000411355 107 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AL356968.1-201ENST00000416622 474 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.84□□□□□ -1.79
SMARCA1P28370 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.84□□□□□ -1.79
SMARCA1P28370 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms