Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC079598.5-201ENST00000547460 117 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC007375.1-201ENST00000554513 578 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 LINC00933-203ENST00000559812 219 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC104072.1-201ENST00000568817 668 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC104581.2-201ENST00000572227 430 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AL031274.2-201ENST00000599419 203 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC243960.4-201ENST00000600532 288 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC021171.1-201ENST00000603137 706 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC091834.1-201ENST00000614543 472 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
HLA-DMBP28068 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
HLA-DMBP28068 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
HLA-DMBP28068 RNU6-658P-201ENST00000384606 106 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 MIR518A2-201ENST00000384966 87 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL603865.2-201ENST00000401679 213 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL353621.1-201ENST00000418219 243 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL160275.3-201ENST00000423876 471 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 GPM6BP2-201ENST00000432046 144 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 GTF2IP3-201ENST00000433887 494 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL161788.1-201ENST00000441805 169 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 GPM6BP1-201ENST00000446387 144 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC055855.1-201ENST00000489563 579 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC018868.1-201ENST00000491307 315 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 HMGB1P35-201ENST00000503360 598 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC107393.1-201ENST00000512403 346 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 SNORA48.11-201ENST00000517015 89 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 RN7SKP258-201ENST00000517151 304 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 OR5AL2P-201ENST00000532185 920 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 HSBP1P1-201ENST00000555205 166 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC010928.2-201ENST00000588017 287 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC073544.2-201ENST00000601155 540 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC106052.1-201ENST00000608029 497 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC009974.1-201ENST00000608881 455 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 AC138627.2-201ENST00000624202 601 ntBASIC1.29□□□□□ -2.2
HLA-DMBP28068 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
HLA-DMBP28068 CDC27P3-201ENST00000635418 1910 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 RNU1-17P-201ENST00000363022 152 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 SNORA25B-201ENST00000365507 128 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 SNORA8-201ENST00000384574 139 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 RNU6-997P-201ENST00000384725 107 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 SNORA40.19-201ENST00000390846 128 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AL021407.1-201ENST00000404531 386 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 RPL36AP53-201ENST00000432891 316 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 MTND6P13-201ENST00000443510 523 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.28□□□□□ -2.2
HLA-DMBP28068 Y_RNA.638-201ENST00000459374 113 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC010631.1-201ENST00000474150 156 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 RPL36AP48-201ENST00000485521 314 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC096745.1-201ENST00000509945 370 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 SNORA4.4-201ENST00000515921 135 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC034114.1-201ENST00000520293 285 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.28□□□□□ -2.2
HLA-DMBP28068 UBE2L4-201ENST00000587688 464 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC091057.3-201ENST00000602684 733 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 BNIP3P10-201ENST00000605360 577 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AL391813.2-201ENST00000609113 322 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AC231657.1-201ENST00000624313 397 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 AL356094.1-201ENST00000624663 1212 ntBASIC1.28□□□□□ -2.2
HLA-DMBP28068 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
HLA-DMBP28068 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HLA-DMBP28068 U8.3-201ENST00000363321 132 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 Y_RNA.140-201ENST00000363474 103 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 snoZ40.1-201ENST00000364540 72 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 RNU6-744P-201ENST00000365557 107 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 Z98749.2-208ENST00000381646 500 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
HLA-DMBP28068 RNU6-1316P-201ENST00000384242 108 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 MIR561-201ENST00000385216 97 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC244636.1-201ENST00000421152 228 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 RSU1P2-202ENST00000437884 485 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms