Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC025588.3-201ENST00000604182 274 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 AC079791.1-201ENST00000605356 973 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 MIR6779-201ENST00000617283 64 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 U6.48-201ENST00000618523 106 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 AC243829.3-201ENST00000622177 108 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 AL356585.4-201ENST00000623078 1229 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.53□□□□□ -2.33
HMGA1P17096 AL391516.1-201ENST00000554380 2449 ntBASIC0.53□□□□□ -2.33
HMGA1P17096 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.53□□□□□ -2.33
HMGA1P17096 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.52□□□□□ -2.33
HMGA1P17096 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.52□□□□□ -2.33
HMGA1P17096 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.52□□□□□ -2.33
HMGA1P17096 HAUS6P2-201ENST00000433254 2404 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 RNA5SP327-201ENST00000362494 101 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 RNU6-37P-201ENST00000362692 107 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 RNU6-11P-201ENST00000364234 107 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 MIR100-201ENST00000385259 80 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 AC023141.4-201ENST00000412031 328 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.52□□□□□ -2.33
HMGA1P17096 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.52□□□□□ -2.33
HMGA1P17096 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.52□□□□□ -2.33
HMGA1P17096 RPL36P19-201ENST00000430744 301 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 AL353718.1-201ENST00000451028 517 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 RNU6-798P-201ENST00000516912 103 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 CENPUP1-201ENST00000526649 1202 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 AL356432.3-201ENST00000568952 465 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 AC005668.1-201ENST00000571142 476 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.52□□□□□ -2.33
HMGA1P17096 AL118508.4-201ENST00000624142 1176 ntBASIC0.52□□□□□ -2.33
HMGA1P17096 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
HMGA1P17096 RNU6-185P-201ENST00000384421 107 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 MIR518D-201ENST00000385014 87 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 MIR325-201ENST00000385260 98 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC083875.1-201ENST00000419509 405 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGA1P17096 JTBP1-201ENST00000441314 247 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC104689.1-201ENST00000473356 768 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGA1P17096 RNU6-322P-201ENST00000516010 103 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 RNU6-902P-201ENST00000517212 91 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.51□□□□□ -2.33
HMGA1P17096 AP006587.4-201ENST00000526053 529 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.51□□□□□ -2.33
HMGA1P17096 AL589743.1-201ENST00000551932 2712 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC006270.3-201ENST00000605967 1036 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC093838.1-201ENST00000613014 469 ntBASIC0.51□□□□□ -2.33
HMGA1P17096 AC005832.2-201ENST00000538921 1430 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 HSBP1P2-201ENST00000299671 229 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
HMGA1P17096 SNORD115-3-201ENST00000363100 82 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.5□□□□□ -2.33
HMGA1P17096 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.5□□□□□ -2.33
HMGA1P17096 TPMTP3-201ENST00000411928 735 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGA1P17096 UBE2V2P3-201ENST00000433562 437 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGA1P17096 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGA1P17096 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.5□□□□□ -2.33
HMGA1P17096 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AL589880.1-201ENST00000448271 287 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.5□□□□□ -2.33
HMGA1P17096 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.5□□□□□ -2.33
HMGA1P17096 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.5□□□□□ -2.33
HMGA1P17096 SNORA31.6-201ENST00000516241 130 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 RNU6-1004P-201ENST00000516584 111 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AP003034.1-201ENST00000534621 422 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 CR383656.8-201ENST00000549046 145 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.5□□□□□ -2.33
HMGA1P17096 AL359212.1-201ENST00000556608 614 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 MIR4653-201ENST00000585107 83 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.5□□□□□ -2.33
HMGA1P17096 AC138473.1-201ENST00000605717 526 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AP000254.1-201ENST00000609934 520 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 AC243773.3-201ENST00000613270 256 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC0.5□□□□□ -2.33
HMGA1P17096 AC083865.1-201ENST00000636634 831 ntBASIC0.5□□□□□ -2.33
HMGA1P17096 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
HMGA1P17096 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.49□□□□□ -2.33
HMGA1P17096 SNORA29-201ENST00000384183 140 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AL136372.1-201ENST00000403060 228 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 PRRC2CP1-201ENST00000404428 159 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 RNU2-63P-201ENST00000410792 194 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.49□□□□□ -2.33
HMGA1P17096 AC009310.1-201ENST00000414414 451 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 RPS24P7-201ENST00000416921 246 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AL022400.1-201ENST00000423946 935 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGA1P17096 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 RPS27P22-201ENST00000478056 241 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
HMGA1P17096 PSMC1P5-201ENST00000512850 177 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.49□□□□□ -2.33
HMGA1P17096 AC007151.1-201ENST00000572774 483 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AC105245.1-201ENST00000581934 244 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.49□□□□□ -2.33
HMGA1P17096 AC007742.2-201ENST00000618226 398 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 AL121890.5-201ENST00000620848 304 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 MTND5P11-201ENST00000511037 1812 ntBASIC0.49□□□□□ -2.33
HMGA1P17096 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms