Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.367-201ENST00000365544 101 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU5E-6P-201ENST00000365574 115 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 Y_RNA.381-201ENST00000365666 102 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 SNORA36C-201ENST00000384289 132 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 MIR558-201ENST00000384920 94 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU6-1197P-201ENST00000391183 107 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 TXNP7-201ENST00000406296 293 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 BTF3P7-201ENST00000407097 488 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU2-9P-201ENST00000410194 145 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD4P09016 MTCYBP5-201ENST00000423752 1135 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD4P09016 AC093106.2-201ENST00000428212 385 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 TIMM9P3-201ENST00000428659 274 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AL356867.1-201ENST00000429623 299 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD4P09016 RPS29P6-201ENST00000438196 145 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 MTATP6P30-201ENST00000443540 664 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AP000705.1-201ENST00000454567 350 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RPL30P5-201ENST00000494923 336 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD4P09016 HIGD1AP13-201ENST00000509878 289 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU6-390P-201ENST00000516259 103 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 Y_RNA.704-201ENST00000516851 102 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU6-840P-201ENST00000517275 65 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXD4P09016 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXD4P09016 ELOCP31-201ENST00000540463 467 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
HOXD4P09016 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD4P09016 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD4P09016 HMGB1P33-201ENST00000563485 527 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 MIR4319-201ENST00000577285 85 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD4P09016 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 NRBF2P5-201ENST00000603087 788 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD4P09016 ATP1B3P1-201ENST00000605365 821 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 AC139792.3-201ENST00000623525 224 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.62□□□□□ -1.99
HOXD4P09016 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD4P09016 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD4P09016 TPTE2P4-201ENST00000258589 1605 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.61□□□□□ -1.99
HOXD4P09016 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD4P09016 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.61□□□□□ -1.99
HOXD4P09016 AC062016.1-201ENST00000355719 319 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RNU6-1085P-201ENST00000363576 107 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RNU6-1090P-201ENST00000364065 94 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 SNORA25.6-201ENST00000364121 118 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 Y_RNA.256-201ENST00000364594 104 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RNU1-109P-201ENST00000383960 147 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 Y_RNA.450-201ENST00000384198 113 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RPS4XP8-201ENST00000402039 771 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 CIR1P3-201ENST00000405137 479 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXD4P09016 NUP35P1-201ENST00000422734 947 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 MED13P1-201ENST00000428342 171 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 AC079781.2-201ENST00000446424 169 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 MTND2P24-201ENST00000453434 806 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.61□□□□□ -1.99
HOXD4P09016 SNORD97-201ENST00000459187 142 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 HSPE1P6-201ENST00000479457 291 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RN7SL20P-201ENST00000488827 297 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXD4P09016 RN7SKP132-201ENST00000516001 208 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 Y_RNA.693-201ENST00000516641 110 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 RNU6-1092P-201ENST00000516955 87 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXD4P09016 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 AP003034.1-201ENST00000534621 422 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 AL359212.1-201ENST00000556608 614 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 HMGB1P14-201ENST00000557424 591 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 MIR3670-2-201ENST00000582974 65 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 MIR3670-1-201ENST00000584160 65 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 MIR3670-3-201ENST00000584855 65 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC024153.1-201ENST00000603103 365 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC012507.3-201ENST00000603556 477 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 HSPE1P7-201ENST00000604681 321 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AP001330.5-201ENST00000607176 411 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AP001596.2-201ENST00000608410 312 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 MIR3670-4-201ENST00000612260 65 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD4P09016 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC027309.3-201ENST00000623419 351 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 AC091564.4-201ENST00000533934 2194 ntBASIC2.61□□□□□ -1.99
HOXD4P09016 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD4P09016 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.61□□□□□ -1.99
HOXD4P09016 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD4P09016 ZNF680P1-201ENST00000436625 1469 ntBASIC2.6□□□□□ -1.99
HOXD4P09016 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXD4P09016 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HOXD4P09016 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms