Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FCF1P10-201ENST00000407590 479 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 USP9YP6-201ENST00000413550 854 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 BX276092.3-201ENST00000424182 230 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC093106.2-201ENST00000428212 385 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.16□□□□□ -2.06
CLDN9O95484 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 AL139109.1-201ENST00000455491 297 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 RNU6-953P-201ENST00000459154 107 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 SNORD97-201ENST00000459187 142 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC072039.1-201ENST00000477611 581 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC104435.1-201ENST00000483483 166 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 RNU6-1003P-201ENST00000517099 105 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.16□□□□□ -2.06
CLDN9O95484 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 AC105245.1-201ENST00000581934 244 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.16□□□□□ -2.06
CLDN9O95484 MIR4999-201ENST00000585029 91 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AP000811.1-201ENST00000603803 651 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 uc_338.14-201ENST00000613162 166 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CLDN9O95484 uc_338.12-201ENST00000616344 181 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC006338.1-201ENST00000618453 749 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 AC025048.6-202ENST00000627667 438 ntBASIC2.16□□□□□ -2.06
CLDN9O95484 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CLDN9O95484 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.15□□□□□ -2.06
CLDN9O95484 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
CLDN9O95484 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CLDN9O95484 RNY4P16-201ENST00000364768 94 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 RPS12P24-201ENST00000412619 387 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 OR51A5P-201ENST00000415429 942 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN9O95484 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CLDN9O95484 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.15□□□□□ -2.07
CLDN9O95484 RPL22P17-201ENST00000438729 315 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 GDI2P2-201ENST00000445131 608 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN9O95484 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN9O95484 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN9O95484 AC004263.1-201ENST00000479327 332 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 MRPL42P6-201ENST00000486397 371 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 ANXA2P1-201ENST00000505539 926 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN9O95484 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN9O95484 RNA5SP281-201ENST00000516504 135 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AP003122.3-201ENST00000526316 255 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC084851.1-201ENST00000529105 249 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AP000873.5-201ENST00000533906 236 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN9O95484 AGGF1P5-201ENST00000567900 919 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 MIR4782-201ENST00000577987 79 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.15□□□□□ -2.07
CLDN9O95484 NRBF2P1-201ENST00000587407 859 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 MTCYBP22-201ENST00000603788 447 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC007938.3-201ENST00000604965 623 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC018714.1-201ENST00000605028 208 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 SNORD14A-201ENST00000606526 91 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC144521.1-201ENST00000607148 956 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.15□□□□□ -2.07
CLDN9O95484 AL590808.1-201ENST00000618696 141 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC009831.4-201ENST00000620744 325 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CLDN9O95484 AC092104.1-201ENST00000497346 1441 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CLDN9O95484 ZNF720P1-201ENST00000562403 1939 ntBASIC2.15□□□□□ -2.07
CLDN9O95484 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.14□□□□□ -2.07
CLDN9O95484 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
CLDN9O95484 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CLDN9O95484 RNU6-486P-201ENST00000363116 107 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 SNORD113-6-201ENST00000363345 75 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 SMIM11P1-201ENST00000369586 178 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 MIR221-201ENST00000385135 110 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 RNU6-482P-201ENST00000391068 107 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 RPS27AP14-201ENST00000422868 454 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AL353777.1-201ENST00000425552 326 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 RPL37P21-201ENST00000435890 276 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 BRK1P2-201ENST00000442875 223 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 snoU13.23-201ENST00000458863 104 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.14□□□□□ -2.07
CLDN9O95484 SNORA25.11-201ENST00000515935 105 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 RNA5SP112-201ENST00000515937 99 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 RNU6-572P-201ENST00000516724 80 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC022616.6-201ENST00000520479 119 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.14□□□□□ -2.07
CLDN9O95484 AP005902.1-201ENST00000521358 186 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.14□□□□□ -2.07
CLDN9O95484 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 DEFB122-202ENST00000569013 197 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.14□□□□□ -2.07
CLDN9O95484 AL158827.2-201ENST00000602494 330 ntBASIC2.14□□□□□ -2.07
CLDN9O95484 AC011458.1-201ENST00000604034 617 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms