Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-612P-201ENST00000516909 102 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6-1271P-201ENST00000517049 105 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 Y_RNA.715-201ENST00000517082 110 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA3O43365 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 TRAV8-5-201ENST00000537369 341 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA3O43365 AC005476.1-201ENST00000554427 397 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC074050.1-201ENST00000563247 211 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC004584.2-201ENST00000570407 410 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC006600.1-201ENST00000572529 153 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 MIR5701-3-201ENST00000578890 82 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA3O43365 MIR5701-1-201ENST00000585138 82 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 HMGB1P50-201ENST00000605814 607 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC100812.1-201ENST00000607622 580 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 MIR5701-2-201ENST00000615634 82 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 U6.99-201ENST00000637524 83 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA3O43365 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA3O43365 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA3O43365 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA3O43365 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
HOXA3O43365 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXA3O43365 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
HOXA3O43365 SPRR2C-201ENST00000290702 219 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RNU5E-7P-201ENST00000365290 117 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 RNU1-13P-201ENST00000384499 162 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 SNORA37-201ENST00000384504 129 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 SNORD96B-201ENST00000386148 79 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RNA5SP317-201ENST00000410176 116 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RNA5SP311-201ENST00000411290 116 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXA3O43365 MTND3P9-201ENST00000429526 346 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RPL23AP25-201ENST00000430973 463 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 OR4C10P-201ENST00000434991 931 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 DYNLT3P2-201ENST00000442517 295 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RPS3AP12-201ENST00000443616 753 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 OSTCP8-201ENST00000445117 448 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RPS3AP46-201ENST00000448352 682 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 MTND4LP22-201ENST00000508209 276 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 RNA5SP315-201ENST00000516340 116 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 RNA5SP312-201ENST00000517068 116 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXA3O43365 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 HSPE1P5-201ENST00000561489 272 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC106785.1-201ENST00000565935 262 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXA3O43365 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 VN1R91P-201ENST00000594377 169 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC007390.2-201ENST00000606229 3803 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC005046.1-201ENST00000608515 625 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC015813.4-201ENST00000610469 179 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 U2.1-201ENST00000618978 145 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 AC140113.4-201ENST00000622087 222 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA3O43365 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA3O43365 USP8P1-201ENST00000494673 3183 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXA3O43365 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA3O43365 AL133243.3-201ENST00000617415 3004 ntBASIC3.51□□□□□ -1.85
HOXA3O43365 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA3O43365 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA3O43365 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 Z82217.1-201ENST00000625157 8149 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AC032011.1-201ENST00000611703 1549 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 AC118273.1-201ENST00000525324 3006 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA3O43365 SNORD50.1-201ENST00000362987 71 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 RNA5SP189-201ENST00000364920 115 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 Y_RNA.476-201ENST00000384347 108 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 RNU6-700P-201ENST00000391043 107 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA3O43365 AC007098.1-201ENST00000420122 367 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AC092423.1-201ENST00000430165 186 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AL358472.1-201ENST00000431295 329 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA3O43365 MTCO3P8-201ENST00000453691 755 ntBASIC3.5□□□□□ -1.85
HOXA3O43365 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms