Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 WASF1P1-201ENST00000447560 1131 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 RPL21P41-201ENST00000459863 264 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC11O43248 AC008885.1-201ENST00000514930 301 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXC11O43248 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC11O43248 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXC11O43248 LINC00933-203ENST00000559812 219 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 MIR4703-201ENST00000577728 79 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC093732.2-201ENST00000607950 274 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC087241.4-201ENST00000612441 480 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC139792.3-201ENST00000623525 224 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC124864.2-201ENST00000624736 186 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC11O43248 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC11O43248 MTND4P14-201ENST00000435799 1354 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC11O43248 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXC11O43248 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 RNU6-1179P-201ENST00000384667 107 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 AL122016.1-201ENST00000403365 367 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 RNU2-29P-201ENST00000410423 189 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC11O43248 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC11O43248 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC11O43248 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXC11O43248 HMGN2P10-201ENST00000448085 265 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 PSPHP1-201ENST00000450062 261 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 BTF3P15-201ENST00000455606 336 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 SRRM1P2-201ENST00000464531 1192 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 GMFBP1-201ENST00000467831 427 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 RPL37P25-201ENST00000507308 276 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC11O43248 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXC11O43248 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 AL137843.1-201ENST00000605078 385 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 AC002064.3-201ENST00000623448 346 ntBASIC3.23□□□□□ -1.89
HOXC11O43248 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXC11O43248 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC11O43248 OR4G2P-201ENST00000328113 903 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 SNORD21-201ENST00000383953 95 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 SNORA54-201ENST00000384281 123 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 Y_RNA.481-201ENST00000384373 102 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 SNORA44-201ENST00000384584 132 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 RNU6-750P-201ENST00000390946 107 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 MTCO3P40-201ENST00000392516 676 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AL591416.1-201ENST00000404015 867 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 RN7SKP220-201ENST00000410611 288 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 RPL21P90-201ENST00000415692 466 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 DNAJC19P4-201ENST00000440115 345 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXC11O43248 NIPA2P5-201ENST00000452282 464 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AC233279.1-201ENST00000455300 423 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AP001486.1-201ENST00000463339 476 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AL049873.1-201ENST00000480540 376 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 RN7SL283P-201ENST00000489055 303 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC11O43248 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXC11O43248 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.22□□□□□ -1.89
HOXC11O43248 AL121821.2-201ENST00000556081 394 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC11O43248 AC007151.1-201ENST00000572774 483 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 AC012557.2-201ENST00000605919 418 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AC017083.3-201ENST00000609955 700 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXC11O43248 AC099654.12-201ENST00000639868 649 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC11O43248 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC11O43248 ZNF519P1-201ENST00000449011 1626 ntBASIC3.22□□□□□ -1.89
HOXC11O43248 HSPA8P4-201ENST00000511877 1920 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC138915.1-201ENST00000565427 1685 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC11O43248 U3.26-201ENST00000391236 204 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC11O43248 TIMM9P3-201ENST00000428659 274 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 MYL8P-204ENST00000431574 518 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AL583843.1-201ENST00000456070 346 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 HMGB1P30-201ENST00000492455 606 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC022493.1-201ENST00000492984 337 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC097462.2-201ENST00000504623 481 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC11O43248 AC008716.1-201ENST00000511084 513 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC113155.1-201ENST00000511141 769 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC104136.1-201ENST00000512969 394 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC112206.3-201ENST00000514578 389 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms