Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Sh3rf1Q69ZI1 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
Sh3rf1Q69ZI1 Prob1-201ENSMUST00000097619 3021 ntBASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Gm13474-201ENSMUST00000122466 815 ntBASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Sh3rf1Q69ZI1 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Gm7284-201ENSMUST00000131667 944 ntBASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Gm27741-201ENSMUST00000185060 237 ntBASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Gm7370-201ENSMUST00000219471 767 ntBASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Sh3rf1Q69ZI1 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Gm25016-201ENSMUST00000158399 131 ntBASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sh3rf1Q69ZI1 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.42■□□□□ 0.22
Sh3rf1Q69ZI1 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms