Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL358072.1-201ENST00000604156 575 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC013562.2-201ENST00000611632 603 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 AC104237.2-201ENST00000612456 443 ntBASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS54Q9P1Q0 MTND4P4-201ENST00000439033 1366 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 RNU6-188P-201ENST00000364207 107 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 SMIM11P1-201ENST00000369586 178 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 SET-203ENST00000372688 801 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 MT-TH-201ENST00000387441 69 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AL049545.1-201ENST00000401856 572 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 RNU2-68P-201ENST00000410878 191 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 SEPT2P1-201ENST00000419651 180 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 MTND2P18-201ENST00000419962 1030 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 MTND1P26-201ENST00000440488 538 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 FABP5P15-201ENST00000453566 214 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 SNORD97-201ENST00000459187 142 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 RPL37P6-201ENST00000460682 294 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 MTND1P3-201ENST00000484956 952 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 RPS3AP4-201ENST00000555161 764 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC009163.5-201ENST00000575421 637 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC012360.2-201ENST00000609349 391 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 MTND5P6-201ENST00000422338 1798 ntBASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS54Q9P1Q0 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RNU4-1-201ENST00000363925 141 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RNU1-138P-201ENST00000384093 164 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 MRPL42P2-201ENST00000403169 426 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 BTF3P7-201ENST00000407097 488 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RNU4-53P-201ENST00000410828 140 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 BPY2DP-201ENST00000422208 265 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 CYCSP46-201ENST00000423569 204 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC098614.2-201ENST00000426040 255 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 ISCA1P1-201ENST00000426679 387 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RPL36AP53-201ENST00000432891 316 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 TAF9P1-201ENST00000445421 515 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 EEF1B2P7-201ENST00000451177 676 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 TAF9P2-201ENST00000454958 515 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 MTCO2P6-201ENST00000463134 685 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 MTND3P7-201ENST00000474435 343 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RPL23AP49-201ENST00000492925 468 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RPS27AP10-201ENST00000496103 208 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 FABP5P5-201ENST00000515537 406 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RNU2-10P-201ENST00000516375 211 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 RPL21P5-201ENST00000554662 472 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC009977.1-201ENST00000586015 570 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 OR1M4P-201ENST00000589199 287 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.6-201ENST00000603753 252 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.11-201ENST00000604059 253 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC008162.1-201ENST00000604718 254 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.1-201ENST00000604752 252 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.5-201ENST00000605253 252 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.12-201ENST00000605291 253 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.8-201ENST00000605353 252 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL670379.7-201ENST00000605823 252 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC019226.2-201ENST00000625973 424 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 U2.21-201ENST00000637295 81 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 AC099654.13-201ENST00000639774 207 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 ZNF271P-202ENST00000465539 1970 ntBASIC2.6□□□□□ -1.99
VPS54Q9P1Q0 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 RNU4-21P-201ENST00000362802 126 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 RNU6-778P-201ENST00000363269 103 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 RNU1-73P-201ENST00000383971 164 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 MIR221-201ENST00000385135 110 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AF228730.1-201ENST00000397972 663 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AL021407.1-201ENST00000404531 386 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 Y_RNA.598-201ENST00000410480 95 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AL592045.1-201ENST00000429867 352 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 AC119618.1-201ENST00000434191 222 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 DPPA3P1-201ENST00000448050 469 ntBASIC2.59□□□□□ -1.99
VPS54Q9P1Q0 MTND1P12-201ENST00000455231 147 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms