Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 AC096745.1-201ENST00000509945 370 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RN7SKP209-201ENST00000516888 304 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 TRAV37-201ENST00000553906 342 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 AC100830.2-201ENST00000581636 240 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 MIR5690-201ENST00000583739 73 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 AC006130.2-201ENST00000586202 326 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-85P-201ENST00000605989 107 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.77
PCIF1Q9H4Z3 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
PCIF1Q9H4Z3 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC007823.1-201ENST00000569932 1566 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC005183.1-201ENST00000603687 1979 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.395-201ENST00000383945 109 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.445-201ENST00000384168 102 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.473-201ENST00000384333 102 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 RNU6-306P-201ENST00000384617 107 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 MIR493-201ENST00000385254 89 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 MIR708-201ENST00000390708 88 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.646-201ENST00000410980 101 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AL590383.1-201ENST00000428602 75 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 CECR9-201ENST00000453421 199 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 S100A11P1-201ENST00000477525 312 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC011005.2-201ENST00000487324 359 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 UBE2CP3-201ENST00000502715 450 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC026782.1-201ENST00000512952 449 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC009902.1-201ENST00000519351 183 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC104576.1-201ENST00000524225 88 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC107016.1-201ENST00000550463 337 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 TRAV28-201ENST00000557548 323 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC123912.5-201ENST00000605470 343 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 HMGB1P50-201ENST00000605814 607 ntBASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.02□□□□□ -1.77
PCIF1Q9H4Z3 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC073073.2-201ENST00000609827 2578 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC007685.1-201ENST00000329806 452 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.324-201ENST00000365165 102 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 MIR559-201ENST00000385188 96 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 SNORA75.4-201ENST00000391278 119 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 UBE2D3P2-201ENST00000424409 445 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 HIGD1AP11-201ENST00000438361 280 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC009237.8-201ENST00000445492 379 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 HMGB1P30-201ENST00000492455 606 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 MIR892C-201ENST00000516410 77 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 RN7SKP83-201ENST00000516512 178 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 Y_RNA.711-201ENST00000516993 102 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 RNU1-54P-201ENST00000517181 120 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 RN7SKP289-201ENST00000517244 295 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 OR5D17P-201ENST00000531492 978 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC034105.4-201ENST00000568304 277 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 MIR3690-201ENST00000580266 75 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC093227.2-201ENST00000589357 285 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AL360085.1-201ENST00000604713 532 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AP000654.2-201ENST00000605633 586 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AL157817.1-201ENST00000614264 790 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC007656.2-201ENST00000624902 4547 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 MTND5P19-201ENST00000424872 1794 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 AC007785.2-201ENST00000598627 1916 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 FAM35DP-201ENST00000323387 2712 ntBASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
PCIF1Q9H4Z3 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms