Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC108059.3-201ENST00000456388 214 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AF213884.2-201ENST00000510417 903 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.88□□□□□ -1.95
USP28Q96RU2 RNU6-314P-201ENST00000516574 104 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.88□□□□□ -1.95
USP28Q96RU2 HSPE1P20-201ENST00000538133 289 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.88□□□□□ -1.95
USP28Q96RU2 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.88□□□□□ -1.95
USP28Q96RU2 AC027807.1-201ENST00000559921 996 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC060766.3-201ENST00000591442 263 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC010297.1-201ENST00000623948 149 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AC124864.2-201ENST00000624736 186 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 SEPT14P19-203ENST00000633205 211 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.88□□□□□ -1.95
USP28Q96RU2 ZNF519P1-201ENST00000449011 1626 ntBASIC2.88□□□□□ -1.95
USP28Q96RU2 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USP28Q96RU2 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
USP28Q96RU2 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP28Q96RU2 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.87□□□□□ -1.95
USP28Q96RU2 MIR6073-201ENST00000352083 89 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 VTRNA1-1-201ENST00000363120 99 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 SNORA23-201ENST00000365128 182 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 Y_RNA.333-201ENST00000365274 102 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 MIR491-201ENST00000384877 84 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 RPL17P50-201ENST00000396131 546 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP28Q96RU2 AL162578.1-201ENST00000406202 378 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 RPL21P24-201ENST00000413752 448 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AL353193.1-201ENST00000421444 268 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.87□□□□□ -1.95
USP28Q96RU2 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 RPS3AP12-201ENST00000443616 753 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 RPL23AP20-201ENST00000447965 421 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP28Q96RU2 AC008481.1-201ENST00000463278 396 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AC010631.1-201ENST00000474150 156 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 RPL30P5-201ENST00000494923 336 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP28Q96RU2 AL117351.2-201ENST00000513571 157 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.87□□□□□ -1.95
USP28Q96RU2 AK6P1-201ENST00000540219 478 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.87□□□□□ -1.95
USP28Q96RU2 SUB1P2-201ENST00000556401 297 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 HMGB1P14-201ENST00000557424 591 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.87□□□□□ -1.95
USP28Q96RU2 AC008739.2-201ENST00000597006 317 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 AP003465.2-201ENST00000602571 373 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
USP28Q96RU2 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 CR848007.1-201ENST00000442354 1699 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.87□□□□□ -1.95
USP28Q96RU2 AC026241.1-201ENST00000517873 2142 ntBASIC2.87□□□□□ -1.95
USP28Q96RU2 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP28Q96RU2 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
USP28Q96RU2 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP28Q96RU2 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 Y_RNA.22-201ENST00000362492 102 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 RNU6-859P-201ENST00000362728 107 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 SNORD56.2-201ENST00000363242 71 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 RNU6-188P-201ENST00000364207 107 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 U8.8-201ENST00000365399 135 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 RNU6-198P-201ENST00000384258 104 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 MIR1-2-201ENST00000384961 85 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 RNU2-8P-201ENST00000410727 190 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 FCF1P9-201ENST00000412546 282 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.86□□□□□ -1.95
USP28Q96RU2 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.86□□□□□ -1.95
USP28Q96RU2 RPL7L1P10-201ENST00000427790 463 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.86□□□□□ -1.95
USP28Q96RU2 RPS12P2-201ENST00000439728 269 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 MTCO3P45-201ENST00000443036 613 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.86□□□□□ -1.95
USP28Q96RU2 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 MTCO2P29-201ENST00000465212 189 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 AC011352.1-201ENST00000512300 793 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 AC096725.1-201ENST00000514266 313 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 MTND4LP26-201ENST00000518144 282 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.86□□□□□ -1.95
USP28Q96RU2 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.86□□□□□ -1.95
USP28Q96RU2 ELOCP29-201ENST00000588193 334 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 AL161756.2-201ENST00000604597 246 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 RPL23AP88-201ENST00000605759 454 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 AL121992.2-201ENST00000606262 256 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 Z82195.2-201ENST00000612348 18351 ntBASIC2.86□□□□□ -1.95
USP28Q96RU2 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USP28Q96RU2 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP28Q96RU2 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP28Q96RU2 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP28Q96RU2 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP28Q96RU2 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP28Q96RU2 AC008669.1-201ENST00000565823 2178 ntBASIC2.85□□□□□ -1.95
USP28Q96RU2 DDX10P1-201ENST00000448545 1933 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms