Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 U3.30-201ENST00000391308 210 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RNA5SP36-201ENST00000410197 133 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AL356968.1-201ENST00000416622 474 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 EIF4HP2-201ENST00000424380 563 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC091286.1-201ENST00000431233 461 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RPS17P8-201ENST00000434525 335 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RPS4XP22-201ENST00000480755 780 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC098869.1-201ENST00000481627 292 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RNU6-408P-201ENST00000515910 100 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RNU6-794P-201ENST00000517261 64 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AP003733.2-201ENST00000529409 171 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC008033.2-201ENST00000542626 177 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AL390726.5-202ENST00000564800 256 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 MIR4646-201ENST00000580775 63 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC011487.3-201ENST00000593607 453 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC024940.4-201ENST00000605507 246 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AL121932.1-201ENST00000605542 214 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC087385.3-201ENST00000620477 187 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AF127577.6-201ENST00000623352 2191 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 U6.92-201ENST00000636464 89 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 MIR3529-201ENST00000637713 78 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 MAPK10-320ENST00000641462 6696 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC004944.1-201ENST00000517807 3059 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 TLK1P1-201ENST00000456760 2440 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RBBP8P1-201ENST00000449447 1844 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.183-201ENST00000363882 113 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.447-201ENST00000384184 113 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 SNORA36A-201ENST00000384221 132 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RNU6-17P-201ENST00000384245 107 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RNU6-611P-201ENST00000384276 104 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RNU6-843P-201ENST00000384454 104 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RNU6-18P-201ENST00000384527 107 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RNU6-541P-201ENST00000384709 110 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 MIR195-201ENST00000385194 87 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 MIR550A3-201ENST00000390735 95 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AL133475.1-201ENST00000404414 305 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC023141.4-201ENST00000412031 328 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC114755.2-201ENST00000413520 361 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RPL39P29-201ENST00000447779 157 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 PPIAP15-201ENST00000479662 484 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 BTF3L4P4-201ENST00000506381 449 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC017037.1-201ENST00000508460 471 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC093249.4-201ENST00000564755 259 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AL590392.1-201ENST00000604960 446 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 RMST_6.1-201ENST00000611980 203 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 FAM27D1-201ENST00000612308 341 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AC091903.1-201ENST00000624322 454 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 SNORA43.4-201ENST00000629559 138 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 U6.104-201ENST00000637979 90 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 ZNF137P-201ENST00000456718 1920 ntBASIC3.73□□□□□ -1.81
CCDC140Q96MF4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC140Q96MF4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms