Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MTND1P3-201ENST00000484956 952 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC112204.1-201ENST00000502591 103 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC010486.2-201ENST00000505572 483 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 RNA5SP320-201ENST00000516263 124 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 BTF3P12-201ENST00000519620 469 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC106038.2-201ENST00000520706 568 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 OR5B19P-201ENST00000531766 928 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 SNORD53-201ENST00000579969 78 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC073544.2-201ENST00000601155 540 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC092354.1-201ENST00000606057 376 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC103710.1-201ENST00000610003 901 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC013562.2-201ENST00000611632 603 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 DUSP12P1-201ENST00000612874 516 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC122133.1-201ENST00000613964 233 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC130324.3-201ENST00000614165 542 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AF246928.1-201ENST00000623768 87 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AL603839.4-201ENST00000624658 1005 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 AC007494.3-201ENST00000624660 743 ntBASIC2.07□□□□□ -2.08
CCDC54Q8NEL0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 GNG5P1-201ENST00000255500 204 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 MIR21-201ENST00000362134 72 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 Y_RNA.22-201ENST00000362492 102 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 SNORA51.11-201ENST00000384442 131 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RNU6-750P-201ENST00000390946 107 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 U3.40-201ENST00000408706 208 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RPS12P24-201ENST00000412619 387 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 SEPT2P1-201ENST00000419651 180 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL365203.2-201ENST00000423444 196 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC104651.1-201ENST00000427559 735 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 MTND5P25-201ENST00000430499 799 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 GPM6BP2-201ENST00000432046 144 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RPL36AP53-201ENST00000432891 316 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RPL22P17-201ENST00000438729 315 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 MTND1P26-201ENST00000440488 538 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 GPM6BP1-201ENST00000446387 144 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC010587.1-201ENST00000505809 469 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 FABP5P5-201ENST00000515537 406 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RN7SKP132-201ENST00000516001 208 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RNU6-1092P-201ENST00000516955 87 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 RNU2-46P-201ENST00000517038 113 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AP003122.3-201ENST00000526316 255 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC084851.1-201ENST00000529105 249 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC009977.1-201ENST00000586015 570 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC006023.1-201ENST00000603944 259 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC112191.3-201ENST00000604371 277 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL121917.1-203ENST00000605534 577 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC135507.1-201ENST00000607214 561 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 MIR7106-201ENST00000612419 65 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL589994.2-201ENST00000621124 579 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC009878.1-201ENST00000621819 340 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AL031601.2-202ENST00000622650 282 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC019226.2-201ENST00000625973 424 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 MTND5P42-201ENST00000637720 498 ntBASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC54Q8NEL0 AC110491.1-201ENST00000562191 2010 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 RNU6-946P-201ENST00000383878 107 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 RNU6-297P-201ENST00000384636 107 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 MIR196B-201ENST00000384852 84 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 MIR491-201ENST00000384877 84 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL021407.1-201ENST00000404531 386 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 RNU2-68P-201ENST00000410878 191 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC107081.1-201ENST00000414975 361 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC114491.1-201ENST00000416095 246 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL109913.1-201ENST00000421173 514 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 RAC1P6-201ENST00000423911 575 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 MYL8P-204ENST00000431574 518 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AC098831.1-201ENST00000440661 216 ntBASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC54Q8NEL0 UBE2D3P4-201ENST00000441973 436 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms