Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
HDDC3Q8N4P3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HDDC3Q8N4P3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.54□□□□□ -2
HDDC3Q8N4P3 AC104454.1-201ENST00000421341 1401 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
HDDC3Q8N4P3 Y_RNA.97-201ENST00000363094 102 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 RNY4P16-201ENST00000364768 94 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 MIR524-201ENST00000385242 87 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC080125.1-201ENST00000414888 684 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AL109913.1-201ENST00000421173 514 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AL356320.1-201ENST00000429616 163 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AL591212.2-201ENST00000433923 257 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 BRK1P2-201ENST00000442875 223 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 MRPL50P4-201ENST00000446432 475 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 Z73417.1-201ENST00000447373 778 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.53□□□□□ -2
HDDC3Q8N4P3 CACYBPP2-201ENST00000453625 678 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 SSXP1-201ENST00000453640 473 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC080013.2-201ENST00000460866 323 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 RPL22P13-201ENST00000493291 347 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 MIR892C-201ENST00000516410 77 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 RNU6-678P-201ENST00000516832 109 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 MTND2P32-201ENST00000521584 1038 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AGGF1P5-201ENST00000567900 919 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AC027449.1-201ENST00000608890 407 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 AP000240.1-201ENST00000609910 452 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
HDDC3Q8N4P3 AL109809.4-201ENST00000603520 2185 ntBASIC2.53□□□□□ -2
HDDC3Q8N4P3 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.53□□□□□ -2.01
HDDC3Q8N4P3 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 SNORD113-6-201ENST00000363345 75 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RNU6-188P-201ENST00000364207 107 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RNA5SP125-201ENST00000364843 120 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RNU6-1280P-201ENST00000365211 107 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 MIR518C-201ENST00000384822 101 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 FCF1P10-201ENST00000407590 479 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 MIR1302-8-201ENST00000408342 128 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RPS24P7-201ENST00000416921 246 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC098592.1-201ENST00000419352 333 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RPS15AP12-201ENST00000419498 388 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 DPH3P2-201ENST00000422618 250 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC007560.1-201ENST00000426912 237 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 GDI2P2-201ENST00000445131 608 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 IFNA11P-201ENST00000446352 526 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RNU6-572P-201ENST00000516724 80 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 RNU6-1092P-201ENST00000516955 87 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC022616.6-201ENST00000520479 119 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AP005902.1-201ENST00000521358 186 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 CKS1BP7-201ENST00000522230 235 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC011979.2-201ENST00000527568 352 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AP003461.1-201ENST00000528866 78 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC084851.1-201ENST00000529105 249 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 OR4R1P-201ENST00000529879 463 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 ELOCP32-201ENST00000548625 324 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC015712.3-201ENST00000559380 164 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 AL365204.3-201ENST00000612448 685 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 FO624990.1-201ENST00000636373 85 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 TEX21P-201ENST00000447107 1476 ntBASIC2.52□□□□□ -2.01
HDDC3Q8N4P3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 SNORD114-30-201ENST00000364448 72 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 RNU1-100P-201ENST00000365255 165 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 RNU1-138P-201ENST00000384093 164 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 RNU6-748P-201ENST00000384648 107 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 U6atac.2-201ENST00000408644 118 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 AC107081.1-201ENST00000414975 361 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 RPL22P18-201ENST00000417197 377 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 SRIP2-201ENST00000428470 166 ntBASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.51□□□□□ -2.01
HDDC3Q8N4P3 AC093899.1-201ENST00000457984 376 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms