Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 RNU1-58P-201ENST00000362413 163 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 SNORD114-1-201ENST00000362705 72 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 MIR649-201ENST00000384843 97 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 SNORA26.9-201ENST00000391322 122 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC010385.1-201ENST00000412374 256 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC092634.6-201ENST00000418558 192 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 EIF1P1-201ENST00000421436 341 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC244023.1-201ENST00000426884 112 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 ARL5AP3-201ENST00000439327 386 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC009474.2-201ENST00000451383 136 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 RPS27AP10-201ENST00000496103 208 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 TRBVA-201ENST00000498804 316 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 SNORD19.2-201ENST00000516978 73 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC104997.1-201ENST00000519761 717 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC009977.1-201ENST00000586015 570 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 VN1R82P-201ENST00000601481 356 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC242498.1-201ENST00000604134 111 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC243994.1-201ENST00000618627 109 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC009318.4-201ENST00000620496 486 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AL109659.3-201ENST00000624985 950 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.27□□□□□ -2.37
LINC00643Q86TS7 AC095038.3-201ENST00000634439 195 ntBASIC0.27□□□□□ -2.37
LINC00643Q86TS7 SNORA48.2-201ENST00000390926 124 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 RNU6-482P-201ENST00000391068 107 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 MIR1262-201ENST00000408276 93 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 RAB11AP1-201ENST00000442978 646 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 HMGN2P9-201ENST00000476875 229 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 RPL21P47-201ENST00000483696 477 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC010409.1-201ENST00000487382 476 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 COX6CP6-201ENST00000490840 228 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 MTND4P2-201ENST00000507767 1203 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 SNORA25.11-201ENST00000515935 105 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 RNVU1-2-201ENST00000516326 135 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 RN7SKP219-201ENST00000516825 296 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 HIGD1AP5-201ENST00000529959 259 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 YWHAZP1-201ENST00000556286 722 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AL512598.1-201ENST00000610158 273 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC008121.3-201ENST00000618726 433 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC009033.1-201ENST00000624279 431 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 AC099063.3-201ENST00000642066 185 ntBASIC0.26□□□□□ -2.37
LINC00643Q86TS7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.26□□□□□ -2.37
LINC00643Q86TS7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 HAUS6P2-201ENST00000433254 2404 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 SNORD14D-201ENST00000384390 87 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL021407.1-201ENST00000404531 386 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 RNU4-26P-201ENST00000410270 107 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 SMC4P1-201ENST00000414479 527 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 ZYG11AP1-201ENST00000430329 837 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL512637.2-201ENST00000431287 1256 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 RPS20P20-201ENST00000460498 340 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC134050.1-201ENST00000495088 933 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL163195.1-201ENST00000496941 348 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 PDCD5P2-201ENST00000507570 312 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC113398.2-201ENST00000507630 558 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC108078.1-201ENST00000508073 725 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 RNU4-18P-201ENST00000516751 149 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC090079.2-201ENST00000575289 768 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AP000860.1-201ENST00000605250 559 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AL157834.3-201ENST00000615543 103 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 AC068700.1-201ENST00000565862 3754 ntBASIC0.25□□□□□ -2.37
LINC00643Q86TS7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.25□□□□□ -2.37
LINC00643Q86TS7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 MTND5P31-201ENST00000419366 1374 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC134026.1-201ENST00000623249 2239 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 RNU6-921P-201ENST00000384361 107 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 MIR605-201ENST00000385078 83 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 MRPL35P1-201ENST00000404272 572 ntBASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.24□□□□□ -2.37
LINC00643Q86TS7 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms