Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL596276.1-201ENST00000434465 418 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MTND1P4-201ENST00000435196 415 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 SNRPEP9-201ENST00000436794 238 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 FABP5P13-201ENST00000452144 328 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 RNU6-261P-201ENST00000459506 102 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 RPL36AP51-201ENST00000487216 318 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC117522.3-201ENST00000507974 584 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 SNORA70.19-201ENST00000516717 90 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 RNA5SP503-201ENST00000517047 117 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MTND1P5-201ENST00000517906 940 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AP003122.3-201ENST00000526316 255 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC084851.1-201ENST00000529105 249 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AL157687.1-201ENST00000554853 619 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC091544.4-201ENST00000555268 342 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MIR4703-201ENST00000577728 79 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 RNU6-1029P-201ENST00000384109 107 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC068050.1-201ENST00000394891 380 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 RN7SKP111-201ENST00000410349 271 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 RNU2-29P-201ENST00000410423 189 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AL592045.1-201ENST00000429867 352 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 HMGB1P18-201ENST00000438801 619 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC016691.1-201ENST00000441321 413 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 ELOCP23-201ENST00000452014 332 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC104806.1-201ENST00000508720 308 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 RNU6-123P-201ENST00000516163 102 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 SNORA64.4-201ENST00000516632 81 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 RNU6-1315P-201ENST00000517187 99 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC006557.5-201ENST00000603126 811 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC007621.1-201ENST00000604544 437 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 MIR15A-201ENST00000607334 83 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 DUSP12P1-201ENST00000612874 516 ntBASIC3.14□□□□□ -1.91
COL28A1Q2UY09 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL28A1Q2UY09 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC006020.1-201ENST00000420179 1854 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC027514.1-201ENST00000588561 1603 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 MIR148B-201ENST00000362252 99 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.9-201ENST00000362354 101 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RNU6-996P-201ENST00000365438 107 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.372-201ENST00000365599 102 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 Y_RNA.409-201ENST00000383990 98 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RNU6-648P-201ENST00000410190 107 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RNU4-46P-201ENST00000410818 138 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 EIF1P1-201ENST00000421436 341 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 USP9YP18-201ENST00000425912 695 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AL606489.2-201ENST00000433886 234 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 MTND1P18-201ENST00000448191 573 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 CECR9-201ENST00000453421 199 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RPS29P15-201ENST00000458329 171 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RN7SL863P-201ENST00000462370 296 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC006512.1-201ENST00000468816 291 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RPS15AP34-201ENST00000487776 387 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 SUMO2P6-201ENST00000505273 288 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 RBBP4P6-201ENST00000508098 202 ntBASIC3.13□□□□□ -1.91
COL28A1Q2UY09 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.13□□□□□ -1.91
COL28A1Q2UY09 AC091826.1-201ENST00000514065 313 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms