Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.42□□□□□ -1.7
SF3A1Q15459 AC034105.4-201ENST00000568304 277 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.42□□□□□ -1.7
SF3A1Q15459 MIR3942-201ENST00000585264 109 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 OR1M4P-201ENST00000589199 287 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 AC024220.1-201ENST00000603675 484 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 APOOP1-201ENST00000604695 592 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 uc_338.5-201ENST00000611839 155 ntBASIC4.42□□□□□ -1.7
SF3A1Q15459 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.42□□□□□ -1.7
SF3A1Q15459 AC110491.1-201ENST00000562191 2010 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 Z98749.2-208ENST00000381646 500 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 U1.1-201ENST00000384101 164 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 RAP1BP3-201ENST00000407180 549 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 MTHFD2P2-201ENST00000407725 247 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 Z98941.1-201ENST00000407764 100 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 RNU6-628P-201ENST00000410675 107 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AC016831.2-201ENST00000417179 352 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.41□□□□□ -1.7
SF3A1Q15459 OR4C10P-201ENST00000434991 931 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AL714022.1-201ENST00000439897 151 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AC026801.1-201ENST00000497178 464 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.41□□□□□ -1.7
SF3A1Q15459 RNU6-864P-201ENST00000516256 108 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AP000889.2-201ENST00000532684 490 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.41□□□□□ -1.7
SF3A1Q15459 AC008121.1-201ENST00000603244 268 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.41□□□□□ -1.7
SF3A1Q15459 RNA5SP196-201ENST00000625967 102 ntBASIC4.41□□□□□ -1.7
SF3A1Q15459 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SF3A1Q15459 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.41□□□□□ -1.7
SF3A1Q15459 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SF3A1Q15459 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.4□□□□□ -1.7
SF3A1Q15459 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
SF3A1Q15459 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SF3A1Q15459 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SF3A1Q15459 RNU6-37P-201ENST00000362692 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 Y_RNA.166-201ENST00000363730 102 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-11P-201ENST00000364234 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-7-201ENST00000364784 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNA5SP97-201ENST00000365006 84 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-8-201ENST00000365467 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-25P-201ENST00000383873 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-1-201ENST00000383898 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-48P-201ENST00000384161 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-36P-201ENST00000384172 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-4P-201ENST00000384205 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-5P-201ENST00000384238 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-3P-201ENST00000384314 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-16P-201ENST00000384385 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-15P-201ENST00000384534 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-2-201ENST00000384627 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-29P-201ENST00000384637 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-9-201ENST00000384776 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-33P-201ENST00000384793 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 MIR199A2-201ENST00000385289 110 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.4□□□□□ -1.71
SF3A1Q15459 VN1R36P-201ENST00000414936 291 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 BPY2DP-201ENST00000422208 265 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC233279.1-201ENST00000455300 423 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 SNORA84-201ENST00000459229 133 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU7-23P-201ENST00000459465 62 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RN7SL93P-201ENST00000463035 293 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC104472.2-201ENST00000469035 601 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.4□□□□□ -1.71
SF3A1Q15459 AC084198.1-201ENST00000477747 402 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SF3A1Q15459 Y_RNA.687-201ENST00000516558 91 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 SNORD59.2-201ENST00000516873 68 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 SNORA31.21-201ENST00000517180 77 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SF3A1Q15459 OR8R1P-201ENST00000543943 764 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.4□□□□□ -1.71
SF3A1Q15459 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.4□□□□□ -1.71
SF3A1Q15459 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.4□□□□□ -1.71
SF3A1Q15459 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.4□□□□□ -1.71
SF3A1Q15459 AL451007.1-201ENST00000595491 289 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC021646.1-201ENST00000605469 484 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 AC123912.5-201ENST00000605470 343 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 RNU6-6P-201ENST00000606623 107 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SF3A1Q15459 MIR3199-2-201ENST00000636243 86 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SF3A1Q15459 TNPO1P3-201ENST00000436471 2662 ntBASIC4.4□□□□□ -1.71
SF3A1Q15459 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SF3A1Q15459 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SF3A1Q15459 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.39□□□□□ -1.71
SF3A1Q15459 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SF3A1Q15459 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SF3A1Q15459 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.39□□□□□ -1.71
SF3A1Q15459 SPRR2C-201ENST00000290702 219 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SF3A1Q15459 SNORD81.2-201ENST00000365153 76 ntBASIC4.39□□□□□ -1.71
SF3A1Q15459 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.39□□□□□ -1.71
SF3A1Q15459 PDCL2P1-201ENST00000419302 352 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms