Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 TRBV1-201ENST00000476502 284 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 RPL23AP41-201ENST00000484754 458 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC108210.2-201ENST00000503681 201 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 NDUFB4P2-201ENST00000509515 391 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 RNU6-927P-201ENST00000516199 100 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
FOXA1P55317 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA1P55317 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA1P55317 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 AL359212.1-201ENST00000556608 614 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA1P55317 VN1R82P-201ENST00000601481 356 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AL391001.1-201ENST00000602747 715 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 DPPA3P3-201ENST00000603842 430 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC025811.1-201ENST00000604312 472 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 AC004805.2-201ENST00000605382 482 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC135507.1-201ENST00000607214 561 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC097468.3-201ENST00000607956 456 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC007038.2-201ENST00000608095 740 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC107214.2-201ENST00000608204 634 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC004908.2-201ENST00000609090 574 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA1P55317 HMGB1P24-202ENST00000615653 685 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AL449363.1-201ENST00000617815 186 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC013470.4-201ENST00000619978 986 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AL162373.1-201ENST00000620433 407 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AC097655.1-201ENST00000635075 318 ntBASIC1.66□□□□□ -2.14
FOXA1P55317 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA1P55317 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA1P55317 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.65□□□□□ -2.14
FOXA1P55317 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
FOXA1P55317 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
FOXA1P55317 RNU6-433P-201ENST00000363216 104 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 Y_RNA.245-201ENST00000364493 95 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 RNA5SP363-201ENST00000365072 115 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
FOXA1P55317 SNORA40.18-201ENST00000391200 128 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC119751.3-201ENST00000399720 670 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AL139397.2-201ENST00000404529 772 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 SNORD23.1-201ENST00000408212 104 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 MTCO2P8-201ENST00000412213 658 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 HMGB1P49-201ENST00000418882 569 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 ELOCP14-201ENST00000428070 331 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC244035.1-201ENST00000430042 390 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 HSFY7P-201ENST00000432672 318 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.65□□□□□ -2.15
FOXA1P55317 MTND1P28-201ENST00000435623 950 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 HSFY8P-201ENST00000437934 318 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 ELOCP7-201ENST00000439968 331 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 CECR9-201ENST00000453421 199 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 HSFY5P-201ENST00000453726 309 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC013267.1-201ENST00000458227 267 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC091951.3-201ENST00000504093 246 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 MTND4P2-201ENST00000507767 1203 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
FOXA1P55317 MTCO2P15-201ENST00000532655 656 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC136618.2-201ENST00000575091 400 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 MTCO2P2-201ENST00000591258 225 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC072039.2-201ENST00000608883 439 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA1P55317 AC092125.1-201ENST00000562568 1995 ntBASIC1.65□□□□□ -2.15
FOXA1P55317 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
FOXA1P55317 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA1P55317 RNU6-83P-201ENST00000384568 112 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 MIR17-201ENST00000385012 84 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 MIR1305-201ENST00000408300 86 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC106883.1-201ENST00000418805 562 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 SEPT2P1-201ENST00000419651 180 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 BPY2DP-201ENST00000422208 265 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 RPL7P54-201ENST00000438336 674 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC005094.1-201ENST00000440420 368 ntBASIC1.64□□□□□ -2.15
FOXA1P55317 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXA1P55317 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA1P55317 RPL23AP35-201ENST00000451906 501 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms