Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC009063.1-201ENST00000563342 702 ntBASIC3.4□□□□□ -1.87
CTCFP49711 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AC073648.5-201ENST00000603502 305 ntBASIC3.4□□□□□ -1.87
CTCFP49711 AC007363.1-201ENST00000604736 620 ntBASIC3.4□□□□□ -1.87
CTCFP49711 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.4□□□□□ -1.87
CTCFP49711 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AC068880.5-201ENST00000624331 290 ntBASIC3.4□□□□□ -1.87
CTCFP49711 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.4□□□□□ -1.87
CTCFP49711 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.4□□□□□ -1.87
CTCFP49711 MTND1P37-201ENST00000636562 264 ntBASIC3.4□□□□□ -1.87
CTCFP49711 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.4□□□□□ -1.87
CTCFP49711 MTND5P7-201ENST00000413558 1798 ntBASIC3.4□□□□□ -1.87
CTCFP49711 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CTCFP49711 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CTCFP49711 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
CTCFP49711 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CTCFP49711 RNY1P12-201ENST00000364251 105 ntBASIC3.39□□□□□ -1.87
CTCFP49711 MIR9-1-201ENST00000385198 89 ntBASIC3.39□□□□□ -1.87
CTCFP49711 RPS4XP7-201ENST00000406274 780 ntBASIC3.39□□□□□ -1.87
CTCFP49711 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.39□□□□□ -1.87
CTCFP49711 RN7SKP123-201ENST00000410732 291 ntBASIC3.39□□□□□ -1.87
CTCFP49711 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CTCFP49711 AC009414.1-201ENST00000427200 443 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC133104.1-201ENST00000429100 218 ntBASIC3.39□□□□□ -1.87
CTCFP49711 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.39□□□□□ -1.87
CTCFP49711 CST9LP2-201ENST00000437612 320 ntBASIC3.39□□□□□ -1.87
CTCFP49711 Z99127.3-201ENST00000448158 395 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC245517.4-201ENST00000448601 281 ntBASIC3.39□□□□□ -1.87
CTCFP49711 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.39□□□□□ -1.87
CTCFP49711 AC013267.1-201ENST00000458227 267 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC087588.1-201ENST00000462203 316 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC138853.1-201ENST00000503549 823 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC091133.4-201ENST00000511142 308 ntBASIC3.39□□□□□ -1.87
CTCFP49711 RNU1-143P-201ENST00000516296 146 ntBASIC3.39□□□□□ -1.87
CTCFP49711 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.39□□□□□ -1.87
CTCFP49711 AL391840.1-201ENST00000571144 367 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.39□□□□□ -1.87
CTCFP49711 AC068790.2-201ENST00000602601 557 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AL139286.2-201ENST00000606838 396 ntBASIC3.39□□□□□ -1.87
CTCFP49711 U1.23-201ENST00000610293 146 ntBASIC3.39□□□□□ -1.87
CTCFP49711 HULC.1-201ENST00000612720 240 ntBASIC3.39□□□□□ -1.87
CTCFP49711 RNU1-68P-201ENST00000615382 146 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC136475.10-201ENST00000620253 385 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AL589994.2-201ENST00000621124 579 ntBASIC3.39□□□□□ -1.87
CTCFP49711 U1.39-201ENST00000621562 146 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.39□□□□□ -1.87
CTCFP49711 AC025034.2-201ENST00000623264 286 ntBASIC3.39□□□□□ -1.87
CTCFP49711 OR5H6-203ENST00000642105 978 ntBASIC3.39□□□□□ -1.87
CTCFP49711 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.39□□□□□ -1.87
CTCFP49711 AL137003.2-201ENST00000606924 2538 ntBASIC3.38□□□□□ -1.87
CTCFP49711 RPL21P3-201ENST00000395517 478 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 MED13P1-201ENST00000428342 171 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC007919.1-201ENST00000429380 217 ntBASIC3.38□□□□□ -1.87
CTCFP49711 HMGN2P3-201ENST00000433603 273 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC244505.4-201ENST00000434905 287 ntBASIC3.38□□□□□ -1.87
CTCFP49711 HMGN2P5-201ENST00000436882 273 ntBASIC3.38□□□□□ -1.87
CTCFP49711 Z82210.1-201ENST00000440037 231 ntBASIC3.38□□□□□ -1.87
CTCFP49711 PIGFP3-201ENST00000441918 722 ntBASIC3.38□□□□□ -1.87
CTCFP49711 SSXP5-201ENST00000443473 287 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 C1DP4-201ENST00000455429 424 ntBASIC3.38□□□□□ -1.87
CTCFP49711 RPL23AP11-201ENST00000475260 469 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.38□□□□□ -1.87
CTCFP49711 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.38□□□□□ -1.87
CTCFP49711 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.38□□□□□ -1.87
CTCFP49711 AP003392.2-201ENST00000527269 208 ntBASIC3.38□□□□□ -1.87
CTCFP49711 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.38□□□□□ -1.87
CTCFP49711 AMZ2P1-203ENST00000565833 850 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 AC078795.2-201ENST00000602835 1252 ntBASIC3.38□□□□□ -1.87
CTCFP49711 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.38□□□□□ -1.87
CTCFP49711 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CTCFP49711 AL049641.1-201ENST00000441055 1948 ntBASIC3.38□□□□□ -1.87
CTCFP49711 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CTCFP49711 API5P2-201ENST00000397055 1498 ntBASIC3.37□□□□□ -1.87
CTCFP49711 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CTCFP49711 RNU6-181P-201ENST00000363225 107 ntBASIC3.37□□□□□ -1.87
CTCFP49711 RNA5SP139-201ENST00000364340 117 ntBASIC3.37□□□□□ -1.87
CTCFP49711 RNU6-1027P-201ENST00000383998 107 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AL592148.1-201ENST00000413568 445 ntBASIC3.37□□□□□ -1.87
CTCFP49711 MTCO3P41-201ENST00000414801 328 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 AC092047.1-201ENST00000424997 240 ntBASIC3.37□□□□□ -1.87
CTCFP49711 SAR1AP4-201ENST00000429225 591 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.37□□□□□ -1.87
CTCFP49711 AL512844.2-201ENST00000433990 593 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.37□□□□□ -1.87
CTCFP49711 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.37□□□□□ -1.87
CTCFP49711 NEFMP1-201ENST00000443423 1006 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 AC007182.2-201ENST00000489251 402 ntBASIC3.37□□□□□ -1.87
CTCFP49711 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.37□□□□□ -1.87
CTCFP49711 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms