Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-1092P-201ENST00000516955 87 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC090572.1-201ENST00000519251 160 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 MTCYBP20-201ENST00000524239 1129 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 FAM92A1P1-201ENST00000528023 890 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC9P31274 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 AP002360.4-201ENST00000606980 481 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC007684.1-201ENST00000609671 477 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL110115.1-201ENST00000614396 364 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 MIR6863-201ENST00000636112 90 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC9P31274 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC9P31274 AC008568.2-201ENST00000623862 2313 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC9P31274 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXC9P31274 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 Y_RNA.516-201ENST00000384541 124 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 EI24P2-201ENST00000397776 1076 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 RNU4-55P-201ENST00000410731 137 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL031779.1-201ENST00000415663 330 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC007919.1-201ENST00000429380 217 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC092573.2-201ENST00000434546 243 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 MTND1P34-201ENST00000438556 671 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC9P31274 MTND1P1-201ENST00000445453 368 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 HMGB3P8-201ENST00000449709 577 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC126182.1-201ENST00000478134 357 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 RNU6-410P-201ENST00000517006 107 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXC9P31274 AC124947.2-202ENST00000552735 133 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC9P31274 EIF1P4-201ENST00000572664 335 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.6-201ENST00000603753 252 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.11-201ENST00000604059 253 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AC008162.1-201ENST00000604718 254 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.1-201ENST00000604752 252 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.5-201ENST00000605253 252 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.12-201ENST00000605291 253 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.8-201ENST00000605353 252 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL670379.7-201ENST00000605823 252 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AL121992.2-201ENST00000606262 256 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 AC090132.2-201ENST00000615881 347 ntBASIC3.25□□□□□ -1.89
HOXC9P31274 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXC9P31274 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC9P31274 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC9P31274 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC9P31274 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC9P31274 AC027514.1-201ENST00000588561 1603 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC9P31274 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC9P31274 Y_RNA.1-201ENST00000352915 104 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 Y_RNA.22-201ENST00000362492 102 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC9P31274 SMIM11P1-201ENST00000369586 178 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 MIR558-201ENST00000384920 94 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 MIR1-2-201ENST00000384961 85 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 RNU2-9P-201ENST00000410194 145 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AF274854.1-201ENST00000413236 615 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC9P31274 AL590383.1-201ENST00000428602 75 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC244505.4-201ENST00000434905 287 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC002486.1-201ENST00000435098 391 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 DNAJC19P4-201ENST00000440115 345 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 NEFMP1-201ENST00000443423 1006 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 SSXP5-201ENST00000443473 287 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC9P31274 AC132479.1-201ENST00000449160 144 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC9P31274 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 RN7SL297P-201ENST00000483161 293 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 RPL9P33-201ENST00000484311 566 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 SNORA31.1-201ENST00000515993 133 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 SNORA31.5-201ENST00000516190 133 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC9P31274 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 AC010546.1-201ENST00000569391 485 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 MIR4648-201ENST00000580107 72 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC9P31274 AC013553.2-201ENST00000604244 589 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC107294.3-201ENST00000609211 526 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 MIR1291-201ENST00000627649 87 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC9P31274 OR5H6-203ENST00000642105 978 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 AC093010.3-201ENST00000570269 15214 ntBASIC3.24□□□□□ -1.89
HOXC9P31274 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXC9P31274 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms