Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR5739-201ENST00000619803 80 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC068880.4-201ENST00000623082 495 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HLA-DMBP28068 RNU5B-4P-201ENST00000363508 111 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 RNU4-42P-201ENST00000364738 142 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 RNA5SP363-201ENST00000365072 115 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 RNA5SP240-201ENST00000365355 128 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 RNU6-432P-201ENST00000384196 109 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 MTCO1P56-201ENST00000401674 224 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL356421.1-201ENST00000403255 413 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 UBE2FP1-201ENST00000416536 447 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL158823.1-201ENST00000418441 478 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 ISCA1P1-201ENST00000426679 387 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HLA-DMBP28068 RPL7P34-201ENST00000433316 712 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 BTBD7P2-201ENST00000441962 620 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 RPL7P12-201ENST00000446719 750 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC104058.1-201ENST00000448028 297 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC091965.2-201ENST00000512324 613 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HLA-DMBP28068 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC087897.1-201ENST00000550134 156 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL121821.2-201ENST00000556081 394 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 BNIP3P23-201ENST00000599655 511 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 MTCYBP22-201ENST00000603788 447 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC022202.1-201ENST00000613515 211 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC012150.2-201ENST00000621300 544 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC116618.1-201ENST00000634617 774 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HLA-DMBP28068 AC006927.2-201ENST00000639256 389 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.32□□□□□ -2.2
HLA-DMBP28068 ZNF72P-201ENST00000425869 1908 ntBASIC1.32□□□□□ -2.2
HLA-DMBP28068 Z75746.1-201ENST00000440243 2080 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 RNA5SP276-201ENST00000362580 94 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 Y_RNA.408-201ENST00000383987 102 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 MIR1294-201ENST00000408503 142 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 BTF3L4P3-201ENST00000418879 476 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 CYCSP49-201ENST00000420810 319 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC097463.2-201ENST00000421074 142 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 MRPS36P1-201ENST00000421291 307 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC244035.1-201ENST00000430042 390 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 DNAJC19P4-201ENST00000440115 345 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 MTATP6P30-201ENST00000443540 664 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 MTND1P31-201ENST00000449206 961 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 CYP2C59P-201ENST00000457790 269 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC104563.1-201ENST00000476147 376 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 RPS15AP36-201ENST00000492022 382 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC023538.1-201ENST00000534576 736 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC090079.2-201ENST00000575289 768 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 MIR3618-201ENST00000580330 88 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC005776.1-201ENST00000603164 290 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 AL078605.1-201ENST00000603529 500 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 MIR8081-201ENST00000611533 95 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
HLA-DMBP28068 AL773524.1-201ENST00000614065 229 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 AC084768.2-201ENST00000622736 221 ntBASIC1.31□□□□□ -2.2
HLA-DMBP28068 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 NACAP2-201ENST00000318548 624 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 U3.13-201ENST00000364804 214 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AL356432.1-201ENST00000405809 419 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 USP9YP6-201ENST00000413550 854 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 BZW1P2-201ENST00000473537 826 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC034222.1-201ENST00000494052 532 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 SNORA25.15-201ENST00000516487 89 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 RN7SKP219-201ENST00000516825 296 ntBASIC1.3□□□□□ -2.2
HLA-DMBP28068 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.3□□□□□ -2.2
HLA-DMBP28068 AP005639.2-201ENST00000527592 928 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms